Protein Info for HGI48_RS12865 in Dickeya dianthicola 67-19

Annotation: AI-2E family transporter YdiK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 367 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 39 to 55 (17 residues), see Phobius details amino acids 67 to 91 (25 residues), see Phobius details amino acids 163 to 182 (20 residues), see Phobius details amino acids 205 to 274 (70 residues), see Phobius details amino acids 280 to 300 (21 residues), see Phobius details amino acids 310 to 340 (31 residues), see Phobius details PF01594: AI-2E_transport" amino acids 17 to 347 (331 residues), 168.4 bits, see alignment E=1.2e-53

Best Hits

Swiss-Prot: 67% identical to YDIK_SHIFL: Putative transport protein YdiK (ydiK) from Shigella flexneri

KEGG orthology group: None (inferred from 96% identity to ddd:Dda3937_04621)

Predicted SEED Role

"Putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9REN9 at UniProt or InterPro

Protein Sequence (367 amino acids)

>HGI48_RS12865 AI-2E family transporter YdiK (Dickeya dianthicola 67-19)
MMKQSQSQRFDLARILFSLLFIGILIIACFWVVQPFILGFAWASMVVIATWPLLIRLQQR
LWGSRPLAVVVMTLLLVLLFVFPTSILVSSVIDNVSNLISWVGAQGRITPPELDWLQSIP
LVGAKLHSSWHSLAHSGGPALMAKIQPYIGQTASWVVSQAAHIGRFLMHCALMVLFSVLL
YSKGDQVALGVRRFAIRLGRQGGDSAVILAAQAIRAVALGVVVTAIVQSVLGGIGLALAG
IPYTTLLTVLMFLSCVAQIGPLTVLIPAIIWLYWSGDTTWGTVLLVWSGVVGTLDNIIRP
LLIRLGADLPILLILSGVIGGLLAFGMIGLFIGPVVLAVSYRLLSAWMKDSPEPPPIRVI
SHHHKKP