Protein Info for HGI48_RS09425 in Dickeya dianthicola 67-19

Annotation: ABC transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 220 transmembrane" amino acids 17 to 39 (23 residues), see Phobius details amino acids 51 to 75 (25 residues), see Phobius details amino acids 82 to 104 (23 residues), see Phobius details amino acids 148 to 168 (21 residues), see Phobius details amino acids 187 to 210 (24 residues), see Phobius details PF00528: BPD_transp_1" amino acids 30 to 217 (188 residues), 80.1 bits, see alignment E=9.2e-27

Best Hits

Swiss-Prot: 48% identical to METI_PASMU: Probable D-methionine transport system permease protein MetI (metI) from Pasteurella multocida (strain Pm70)

KEGG orthology group: K02072, D-methionine transport system permease protein (inferred from 97% identity to dze:Dd1591_2397)

MetaCyc: 44% identical to L-methionine/D-methionine ABC transporter membrane subunit (Escherichia coli K-12 substr. MG1655)
RXN0-4522 [EC: 7.4.2.11]; 7.4.2.11 [EC: 7.4.2.11]; TRANS-RXN-383 [EC: 7.4.2.11]; TRANS-RXN0-510 [EC: 7.4.2.11]; TRANS-RXN0-511 [EC: 7.4.2.11]

Predicted SEED Role

"Methionine ABC transporter permease protein" in subsystem Methionine Biosynthesis or Methionine Degradation

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.11

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9RCV6 at UniProt or InterPro

Protein Sequence (220 amino acids)

>HGI48_RS09425 ABC transporter permease subunit (Dickeya dianthicola 67-19)
MAELLIDLFNAFNETFQMVGISTLFAVLGGLPLGFLIYVTDRHLFWENRFLYLFGTVLVN
IIRSIPFVILLVLLLPLTQFLLGNTIGPVAAAVPMSVAAIAFYARLVDSALRDVEPGIVE
AAEAFGASPLRIICTVLLPEARAGLLRGLTITLVSLIGYSAMAGIVGGGGVGDLAIRFGY
YRYETQVMVMTVIALVILVQIVQTLGDWLAKRADKRERRR