Protein Info for HGI48_RS08210 in Dickeya dianthicola 67-19

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 415 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 56 to 78 (23 residues), see Phobius details amino acids 86 to 105 (20 residues), see Phobius details amino acids 111 to 133 (23 residues), see Phobius details amino acids 145 to 166 (22 residues), see Phobius details amino acids 174 to 193 (20 residues), see Phobius details amino acids 218 to 239 (22 residues), see Phobius details amino acids 251 to 275 (25 residues), see Phobius details amino acids 283 to 304 (22 residues), see Phobius details amino acids 310 to 333 (24 residues), see Phobius details amino acids 344 to 366 (23 residues), see Phobius details amino acids 372 to 392 (21 residues), see Phobius details PF07690: MFS_1" amino acids 25 to 338 (314 residues), 119.1 bits, see alignment E=2.1e-38 PF00083: Sugar_tr" amino acids 55 to 192 (138 residues), 26.7 bits, see alignment E=2.6e-10

Best Hits

Swiss-Prot: 55% identical to OPDE_PSEAE: Transcription regulatory protein OpdE (opdE) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: None (inferred from 94% identity to dze:Dd1591_2738)

Predicted SEED Role

"Arabinose efflux permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9RC94 at UniProt or InterPro

Protein Sequence (415 amino acids)

>HGI48_RS08210 MFS transporter (Dickeya dianthicola 67-19)
MLSSHSTQNLHGEERKAWGAVVAMSLAAFALVASEFMPVSLLTPLATDLLITEGQAGMGI
SVSGLFALFTALLITPIAAKVERKRLLLSMILLMVISGTIVAFAANVEMFMVGRALIGVA
IGGFWSLSAATSIRLVPAHQVPRALALVNGGNALATVIAAPVGSYLGALIGWRWAFFTVV
PVAMIALAWLMLSMPRLAPRPTSSGSGNVLLLLKKPPIALGMLAVAGFFMGQFMLFTYLR
PFLEAVTRLDISMVSFVLLLIGVGGLIGTFLIGVFLEEDNGLYRTLVSVPIMMAAIATAL
VVYGDAMFTTAALLAVWGRIATATPVAWFTWIARTVPNDVEAGGGLFVAICQLAIALGGT
VGGIIFDTLGYRATFEASALLLAVTAVLAYLAGRSAAKAAGEAEIHTTEALALGE