Protein Info for HGI48_RS04140 in Dickeya dianthicola 67-19

Annotation: IS3 family transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 383 transmembrane" amino acids 240 to 257 (18 residues), see Phobius details PF01527: HTH_Tnp_1" amino acids 12 to 78 (67 residues), 32.6 bits, see alignment E=1.9e-11 PF00665: rve" amino acids 221 to 319 (99 residues), 101 bits, see alignment E=9.9e-33 PF13610: DDE_Tnp_IS240" amino acids 225 to 365 (141 residues), 27.1 bits, see alignment E=1.1e-09 PF13683: rve_3" amino acids 312 to 374 (63 residues), 38.4 bits, see alignment E=2.1e-13 PF13333: rve_2" amino acids 326 to 382 (57 residues), 71.1 bits, see alignment E=1.8e-23

Best Hits

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9RA93 at UniProt or InterPro

Protein Sequence (383 amino acids)

>HGI48_RS04140 IS3 family transposase (Dickeya dianthicola 67-19)
MTKPTSTSKKLRKQHTQEFRDEALKLAERIGVAAAARELSLYESQLYAWRSKQQQQMTSS
ERESELAAENARLKRQLAERDEELAILQKGRDILCEAPEMKYVFIEKHRAEFSIKAMCRV
LRVARSGWYAWRCRRHQVSSRQRFRLVCDDAVSKAFNNAKQRYGAPRLADELPEYNVKTI
AASLRRQGLRAKAARKFSPVSYREHGLPVSENLLKQDFIASGPNQKWVGDITYLRTDEGW
LYLAVVIDLWSRAVIGWSMSSRMTAQLACDALQMALWRRKRPKNVIVHTDRGGQYCSADY
QTLLKRHNLHGSMSAKGCCYDNACAESFFHSLKVECIHGERFISREIMRTTVFNYIECDY
NRWRRHSACGGISPEQFENQNLA