Protein Info for HGI48_RS03605 in Dickeya dianthicola 67-19

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 352 transmembrane" amino acids 26 to 46 (21 residues), see Phobius details amino acids 118 to 139 (22 residues), see Phobius details amino acids 151 to 176 (26 residues), see Phobius details amino acids 216 to 235 (20 residues), see Phobius details amino acids 274 to 300 (27 residues), see Phobius details amino acids 320 to 339 (20 residues), see Phobius details PF19300: BPD_transp_1_N" amino acids 21 to 98 (78 residues), 43.1 bits, see alignment E=4.3e-15 PF00528: BPD_transp_1" amino acids 130 to 351 (222 residues), 138.9 bits, see alignment E=1.6e-44

Best Hits

Swiss-Prot: 42% identical to DPPB_ECOL6: Dipeptide transport system permease protein DppB (dppB) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: K02033, peptide/nickel transport system permease protein (inferred from 97% identity to dze:Dd1591_3370)

MetaCyc: 42% identical to dipeptide ABC transporter membrane subunit DppB (Escherichia coli K-12 substr. MG1655)
ABC-8-RXN [EC: 7.4.2.9]

Predicted SEED Role

"Dipeptide transport system permease protein DppB (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.9

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9RA98 at UniProt or InterPro

Protein Sequence (352 amino acids)

>HGI48_RS03605 ABC transporter permease (Dickeya dianthicola 67-19)
MVFSNRVKPGEWLKPGGVPRRLAKRLLQVVVTLFGLLILTFIIGRVMPIDPVLAIVGQDA
DQSTYHQVYQQLGLDKPLYVQFWIYFNALLHGDLGNALLTGRPVIDDIIRVFPATIELAT
MAIIVGAGLGVPLGVLAAARRGKWADYVVRFISLAGYSTPIFWVGMMGLLVFYAWLNWVG
GAGRVDMAYDGLVENRTGLLLVDSMLDGNWEVFRSALNHLVLPATLLGFHSLAYISRMTR
SFMLAQLSQEYIITARVKGLSEFRVVWAHAFRNILVQLLTVVALAYGSLLEGAVLIETVF
SWPGFGSYLTGSLLLGDMNAVMGCVLLVGLIFVSLNLLSDMLYQVFDPRTRV