Protein Info for HGI48_RS02675 in Dickeya dianthicola 67-19

Annotation: transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 191 PF00440: TetR_N" amino acids 7 to 49 (43 residues), 29.7 bits, see alignment 2.2e-11

Best Hits

Swiss-Prot: 59% identical to YJDC_ECOLI: HTH-type transcriptional regulator YjdC (yjdC) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 97% identity to ddd:Dda3937_02714)

Predicted SEED Role

"Transcriptional regulator, TetR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9RJ64 at UniProt or InterPro

Protein Sequence (191 amino acids)

>HGI48_RS02675 transcriptional regulator (Dickeya dianthicola 67-19)
MQREEVLEQALALLERRGFADTTLDMLADQLGVSPAELLPFWPDREALLYDSLRYHSQQV
NIWRKQVQLDEQLGPEEKLLVRYQRLQDAVSQHRFPGCLFIAACSAFPDPLHPIHQIAEQ
QKQASYQYTKALLEELETDDTDMVALQLELILEGCLSKLLVKRQPSDVTVAKRLAEDVLR
MAMCRKHGALA