Protein Info for HGI48_RS01740 in Dickeya dianthicola 67-19

Annotation: rhamnulokinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 490 PF00370: FGGY_N" amino acids 6 to 222 (217 residues), 117.2 bits, see alignment E=9.4e-38 TIGR02627: rhamnulokinase" amino acids 7 to 459 (453 residues), 637.1 bits, see alignment E=6.9e-196 PF02782: FGGY_C" amino acids 252 to 436 (185 residues), 124.1 bits, see alignment E=6.4e-40

Best Hits

Swiss-Prot: 53% identical to RHAB_PECAS: Rhamnulokinase (rhaB) from Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)

KEGG orthology group: K00848, rhamnulokinase [EC: 2.7.1.5] (inferred from 63% identity to tau:Tola_1043)

Predicted SEED Role

"Rhamnulokinase (EC 2.7.1.5)" in subsystem L-rhamnose utilization (EC 2.7.1.5)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.7.1.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9R916 at UniProt or InterPro

Protein Sequence (490 amino acids)

>HGI48_RS01740 rhamnulokinase (Dickeya dianthicola 67-19)
MPVNIAAIDLGASSGRVIWATYDESDGKLTMQEMHRFANGMVRRHGQDCWDIEDLLQHIL
QGLTKIDAAGIRLDSVGIDSWGVDFVLLDKHGERLGEAVAYRDERTDGVPEQIMQRMSAE
AIYRRTGIQFLKFNSLYQIQAVLNARPEWLPRVERLLLIPDYLHYRLTGKFSCEYTNAST
SQLVNAQTRDWDPDLVALLGPAGAWLQPLTAPGTTLGEWTSPSGHQAKVILPATHDTGSA
IVATPLEGTGAAYISSGTWSLVGVERRTPLTGADAQAINLTNEGGADGTCRVLKNVMGLW
LVQGLQKQWPDLDFATLTAMADQAAPFGFLIQPNDDRFLNPPCMRMAIQEYCRETGQGIP
QTPAELVRCVLDSLALCYDEVLREIESVTGERIDTLHIVGGGSKNRVLNHLCADICQRTV
ITGPVEASALGNIGWQLKGLGIFADLEDVRRMVHRNTPLETLYPREVPNLSEQRKRFAAL
CSDSQIERTH