Protein Info for HGI48_RS00855 in Dickeya dianthicola 67-19

Annotation: PTS transporter subunit EIIC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 459 transmembrane" amino acids 109 to 134 (26 residues), see Phobius details amino acids 146 to 166 (21 residues), see Phobius details amino acids 177 to 198 (22 residues), see Phobius details amino acids 214 to 239 (26 residues), see Phobius details amino acids 255 to 277 (23 residues), see Phobius details amino acids 285 to 312 (28 residues), see Phobius details amino acids 333 to 354 (22 residues), see Phobius details amino acids 365 to 385 (21 residues), see Phobius details amino acids 392 to 418 (27 residues), see Phobius details amino acids 431 to 454 (24 residues), see Phobius details PF00367: PTS_EIIB" amino acids 9 to 41 (33 residues), 47.6 bits, see alignment (E = 9.2e-17) PF02378: PTS_EIIC" amino acids 112 to 398 (287 residues), 116.6 bits, see alignment E=1.3e-37

Best Hits

KEGG orthology group: None (inferred from 78% identity to pct:PC1_4064)

Predicted SEED Role

"PTS system, beta-glucoside-specific IIB component (EC 2.7.1.69) / PTS system, beta-glucoside-specific IIC component / PTS system, beta-glucoside-specific IIA component" in subsystem Beta-Glucoside Metabolism (EC 2.7.1.69)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.1.69

Use Curated BLAST to search for 2.7.1.69

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9R8M4 at UniProt or InterPro

Protein Sequence (459 amino acids)

>HGI48_RS00855 PTS transporter subunit EIIC (Dickeya dianthicola 67-19)
MGKNEVVQSIIAMMGGAENINKVWHCMTRLRFDVINKENINIDTIKTLPGILGAQYQSEQ
FQIIIGPQVAEYYTLLTQNLSGNTARHTEPAATHPATKKGIVSLFMDTVSGVFGPIVPAI
AGAGMIKGLLAGLLALKVIPTKTDTVIIIDLIASGVFYFLPFFLAISAARMFKTNEYLAA
AIAACMMYPSLIDAAKALSSKAPNAIDSFYFIGLLPIPVFNYSASVIPVIFSILALSYIH
RGVDRIMPAVLKTVFTPTLTLFITALVSLTIIGPLGIHFGKGLAWLIQGLFDLSSVLAGL
VVGAIRPVAILTGMHHAMTPIALQNFAEKGYDMLMPMMCMANMAIAGSTFAIYFYEKTRQ
DKSVVLSAAVSALLGITEPALFGVLTKYKKAFLSATIASSIASAFIAFFGVRLFGYILSS
VFSLPAYIGPYFVYAISGVLIALTLSFSLSYLLVVRQNR