Protein Info for HGI48_RS00670 in Dickeya dianthicola 67-19

Annotation: DUF202 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 130 transmembrane" amino acids 38 to 59 (22 residues), see Phobius details amino acids 66 to 87 (22 residues), see Phobius details amino acids 108 to 129 (22 residues), see Phobius details PF02656: DUF202" amino acids 29 to 96 (68 residues), 64.7 bits, see alignment E=4.3e-22

Best Hits

Swiss-Prot: 52% identical to YIDH_ECOL6: Inner membrane protein YidH (yidH) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: K00389, putative membrane protein (inferred from 88% identity to dze:Dd1591_3966)

Predicted SEED Role

"Putative inner membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9RJ44 at UniProt or InterPro

Protein Sequence (130 amino acids)

>HGI48_RS00670 DUF202 domain-containing protein (Dickeya dianthicola 67-19)
MPMSDPASSPTSPDKKIPWQQQGATPDYRFSLANERTFLAWIRTALAFLAGAVAIDQFAP
TLAPPAVRVGIAVFLSLAAALLAWMAYRRWADNERAMRTGQALPYTRLLIIIASCVSAIS
VALALVILLL