Protein Info for HER17_RS20615 in Pectobacterium carotovorum WPP14

Annotation: DNA recombination protein RmuC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 520 transmembrane" amino acids 6 to 26 (21 residues), see Phobius details amino acids 343 to 360 (18 residues), see Phobius details amino acids 375 to 391 (17 residues), see Phobius details PF02646: RmuC" amino acids 171 to 467 (297 residues), 367.5 bits, see alignment E=2.2e-114

Best Hits

Swiss-Prot: 80% identical to RMUC_YERPE: DNA recombination protein RmuC homolog (rmuC) from Yersinia pestis

KEGG orthology group: K09760, DNA recombination protein RmuC (inferred from 94% identity to pct:PC1_4057)

Predicted SEED Role

"DNA recombination protein RmuC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (520 amino acids)

>HER17_RS20615 DNA recombination protein RmuC (Pectobacterium carotovorum WPP14)
MDISIFYGLGGSVVGLLVGWLIASLIHQQKLSRHDTEQQLLAQTLQQTQQSFSEQQQAKQ
QDEQRLRQNELELRTVHVQLSASHEKLQQLTELREECVQLNQELRTLREINSAQEAELRE
VTIRLEETRMAAEEKQRLLANSEQRLTTQFENLANRIFEHSGRKVDEQNKQSLDKLLMPL
REQLDGFRRQVQDSFGAEARERHTLAHEIRNLQQLNAQMAHEAINLTKALKGDNKTQGNW
GEVVLSRVLEASGLREGYEYQTQVSVQTGTNSRLQPDVIVRLPQGKDVVIDAKMSLVAYE
RYFNSDDDAERSVALNEHLLSVRSHIRQLSSKDYQQLPGLRSLDYVLMFIPVEPAFLVAI
DRQPELINEALKHNIMLVSPTTLLVALRTINNLWRYEQQSRNAQQIAEKASRLYDKLRLF
VDDMEALGQSLDKAQGTYRQAMNKLSSGRGNLIGQAEGFRALGVEIKRTISPSLAEKATA
HEHAERDELPDSVAPDAVSPTVETEGEEGEFPLATRTDSY