Protein Info for HER17_RS20095 in Pectobacterium carotovorum WPP14
Annotation: ribosome-associated protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 99% identical to Y266_PECCP: UPF0307 protein PC1_0266 (PC1_0266) from Pectobacterium carotovorum subsp. carotovorum (strain PC1)
KEGG orthology group: K09889, ribosome-associated protein (inferred from 99% identity to pct:PC1_0266)Predicted SEED Role
"FIG138315: Putative alpha helix protein" in subsystem Putative TldE-TldD proteolytic complex
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (183 amino acids)
>HER17_RS20095 ribosome-associated protein (Pectobacterium carotovorum WPP14) MKQKYEDWLNDVPDNQEDDEDDEIIWVSKSEIKRDAEALKDLGAELVELGKNALEKIPLD DDLRAAVELAQRIKKEGRRRQLQLIGKMLRARDPEPIQTALDKLNNRHNQQVALFHKLEQ LRDRLIEEGDDVVPDILALYPHADRQQLRSLVRNAQKEKATNKPPKSARQIFQYLRELAE TTD