Protein Info for HER17_RS19395 in Pectobacterium carotovorum WPP14

Annotation: AraC family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 291 PF12833: HTH_18" amino acids 33 to 113 (81 residues), 77.9 bits, see alignment E=1.2e-25 PF00165: HTH_AraC" amino acids 79 to 112 (34 residues), 33 bits, see alignment 1e-11 PF06445: GyrI-like" amino acids 137 to 291 (155 residues), 127.8 bits, see alignment E=9.1e-41 PF14526: Cass2" amino acids 140 to 289 (150 residues), 40.3 bits, see alignment E=7.9e-14

Best Hits

KEGG orthology group: K13652, AraC family transcriptional regulator (inferred from 70% identity to pao:Pat9b_0550)

Predicted SEED Role

"Uncharacterized protein ygiV"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (291 amino acids)

>HER17_RS19395 AraC family transcriptional regulator (Pectobacterium carotovorum WPP14)
MCDNKTDSYARRFKQVFDYIDCHLDDTLLLEKLSEVAHFSPFHFHRQFCSYCGMPPGRYI
QMMRLKRASYRLAFNPLEKITDIAFDAGFQHSESFSRAFRQMFDLSPTQFRQQPPWVDWY
KRISEPYKARRQIMQGQVKIINFPATSVAMLTHYGQAELINETAARFIEWRKTTGYSPVA
SSQTYGIAPHDPTLTPPDEFEFHICGTVKSPISEDNRFGVINSVIPAGRCAVLRHQGSHD
VLPELAKTLYRDWLPESGEELRDFPLFFHYHNFVHEVAEHELLTDIYLPLK