Protein Info for HER17_RS19160 in Pectobacterium carotovorum WPP14

Annotation: TIGR00645 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 168 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 54 to 76 (23 residues), see Phobius details amino acids 109 to 126 (18 residues), see Phobius details amino acids 137 to 156 (20 residues), see Phobius details TIGR00645: TIGR00645 family protein" amino acids 1 to 162 (162 residues), 247.4 bits, see alignment E=4.5e-78 PF03350: UPF0114" amino acids 9 to 125 (117 residues), 125.3 bits, see alignment E=7.6e-41

Best Hits

Swiss-Prot: 97% identical to Y431_PECCP: UPF0114 protein PC1_0431 (PC1_0431) from Pectobacterium carotovorum subsp. carotovorum (strain PC1)

KEGG orthology group: None (inferred from 97% identity to pct:PC1_0431)

Predicted SEED Role

"Putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (168 amino acids)

>HER17_RS19160 TIGR00645 family protein (Pectobacterium carotovorum WPP14)
MERFIENLMYSSRWLLAPVYLGLSLGLLALAIKFFQEVFHVLPNILDIAEADLVLVLLSL
IDMTLVGGLLVMVMLSGYENFVSALDISKGREKLNWLGKMDSGSLKNKVAASIVAISSIH
LLRVFMDARNIPDNKLMWYVIIHLTFVLSALVMGYLDRMSRYEKSKTA