Protein Info for HER17_RS18445 in Pectobacterium carotovorum WPP14

Annotation: phage tail tape measure protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 914 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details transmembrane" amino acids 544 to 566 (23 residues), see Phobius details amino acids 572 to 594 (23 residues), see Phobius details amino acids 600 to 621 (22 residues), see Phobius details amino acids 629 to 651 (23 residues), see Phobius details amino acids 657 to 679 (23 residues), see Phobius details TIGR01760: phage tail tape measure protein, TP901 family, core region" amino acids 203 to 554 (352 residues), 36.8 bits, see alignment E=1.2e-13 PF10145: PhageMin_Tail" amino acids 252 to 447 (196 residues), 65.4 bits, see alignment E=3.3e-22

Best Hits

Predicted SEED Role

"Phage tape measure"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (914 amino acids)

>HER17_RS18445 phage tail tape measure protein (Pectobacterium carotovorum WPP14)
MSNSLQLSVLLRAVDQATRPFRAVQDAARTLSGEIQGSQDQLRSLNAQAGRVEGFRRTST
ELANTGRALEKAKADAAALAVAFRNTANPTRAQTKALEEARKKATELQAQQNRLRQSVQN
QRGALRAAGIDTRNLASAERQLRTNIAAATDTLNRQRAALARVSQQQEKLNAVKKRYEKG
KEITAAVRNTSAAAFAGGSAALYAGSRLIAPSVQADGHGARIAAQTGGNAADGEQYTRVI
KEINASGVSGDLNQIAEAVAAVRSTLGAMGDVGETELARISRKALDIQATLGGDATESIQ
IAAIMMKNGLAKNSDEAFDLMVSGMQRVSAQMRGELPEILHEYSTHFRNMGFSGSEAMTL
LVDMAQQGKFALDKTGDAIKEFSIRGSDMSKASVEAYDAIGLNAAKMSNAIASGGDKARA
AMQKTATGLLKIKDPAERANAAIALFGTPIEDLSIDQIPKFLSALAGTENKLGDVSGAAD
RMGDTLRDNLQGDISKLQGAMAGLRFKLFNDDDGILRKLTQAATAWLNRVNEWVTANPEL
ARQIVMVAGAAAALIAVVGGIGLVIWPVMAGINALIAGAGFLGVGFGALTNPMAVVRGAM
SGFGRVLMWLFTSPLALLRTGITLVGSALGVLLSPVGLAVAAIVGGALLIWKYWEPIQAF
IGGVVEGFVAASAPIIAAFEPLQPVFTWIGDKIKALFGWFGDLLTPVKSTAAELDGAASM
GKRFGEALANGLNIIMHPLESLKKGVSWLLEKLGLVDEKSKSLPTADSILPPQEAAALKV
GVSTAPVPQGDDAKAIADRYSGVRDNGGGIKLGEFAVVGEHGPEIVEGPANVTSRKKTAA
LASAAMNMSAYRPIAPTVQASAASSPVSIHAPISIVAQPGQSAQDIAQEVTRQLEQRERA
ARSRAFSQYSYQGG