Protein Info for HER17_RS17310 in Pectobacterium carotovorum WPP14

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 460 transmembrane" amino acids 37 to 55 (19 residues), see Phobius details amino acids 68 to 88 (21 residues), see Phobius details amino acids 104 to 123 (20 residues), see Phobius details amino acids 129 to 153 (25 residues), see Phobius details amino acids 164 to 185 (22 residues), see Phobius details amino acids 197 to 218 (22 residues), see Phobius details amino acids 264 to 287 (24 residues), see Phobius details amino acids 306 to 323 (18 residues), see Phobius details amino acids 335 to 353 (19 residues), see Phobius details amino acids 359 to 379 (21 residues), see Phobius details amino acids 391 to 412 (22 residues), see Phobius details amino acids 423 to 444 (22 residues), see Phobius details PF07690: MFS_1" amino acids 42 to 408 (367 residues), 154.3 bits, see alignment E=2.2e-49

Best Hits

Swiss-Prot: 43% identical to TUB3_AGRVI: Putative tartrate transporter (ttuB) from Agrobacterium vitis

KEGG orthology group: None (inferred from 97% identity to eca:ECA0865)

Predicted SEED Role

"Nitrate/nitrite transporter" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (460 amino acids)

>HER17_RS17310 MFS transporter (Pectobacterium carotovorum WPP14)
MSKVSAAATAGQSASKPSTTTPSAVEQSAIRKISWRLVPFVGLMFFINFLDRTAISFAGP
NGMNTDLALTVAQFGLASGIFFIGYILLEVPSNLALHRFGARKWLSRIMVSWGIVSLLFT
WVSSIEGLYILRFLLGIAEAGFFPGAILFLSMWVPARYRSRILSLFYLAQPLTVVLGAPL
AAWLIEQHGLFGLSGWRVMFLGVSVPAIIVGIITWFYLVDRPADAKWLNADEKRWLVSEL
ESEHATKNHSKHPSVMTVMFNKRVWVLCLIYFGFIYGLYALAFFLPTIIAGFQQQFGTTF
NVMDKGLITAIPYLPAAIVMYFWSRDATRRGCRSWHIAIPALTGAISIPLALFMESPTAT
IAVITVTACSIFAALPNFWTLPTQFLTGASAAAAIALINTIGNVAGFSAGYITGAVRGVT
GTYVLPMMIVGGLMLLSAVLIVLLSRSDRLSKSASATQEH