Protein Info for HER17_RS17255 in Pectobacterium carotovorum WPP14
Annotation: TonB family protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: None (inferred from 83% identity to pct:PC1_0759)Predicted SEED Role
"Ferric siderophore transport system, periplasmic binding protein TonB" in subsystem Campylobacter Iron Metabolism or Hemin transport system or Ton and Tol transport systems
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (324 amino acids)
>HER17_RS17255 TonB family protein (Pectobacterium carotovorum WPP14) MSRENLQGALLGANRTGRSVLLGSRPLAHSYPTAALTSDAPNWRSLAFFVLSCVAHAALA LFFLLHSSPKESIEDMAGNAGGSMQVTMMAAAMAQQADSSLPTEESSDPPVVATQTVSLE QPISPPLPEHPNPVIKQPVIERKPVTPVAEKRPPVREKKQPEKKPESKPKEQQQQATQQQ TEKKSESPVATNQTGDAPSLMQASAGMPGSAATAKAGESDSGQAARGAGKSNSQNFRALH RRVNYPSRAKALGVEGKVRVKFDITGSGTVTNVQILSETPDGVFGDDVMKDMARWRYRTE APVENQVVSIVFKLNGHIRVDDQQ