Protein Info for HER17_RS16230 in Pectobacterium carotovorum WPP14

Annotation: YaeQ family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 184 PF07152: YaeQ" amino acids 1 to 173 (173 residues), 250 bits, see alignment E=5.4e-79

Best Hits

Swiss-Prot: 62% identical to YAEQ_SALTY: Uncharacterized protein YaeQ (yaeQ) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: None (inferred from 97% identity to pwa:Pecwa_3339)

Predicted SEED Role

"YaeQ protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (184 amino acids)

>HER17_RS16230 YaeQ family protein (Pectobacterium carotovorum WPP14)
MALKATVYKAAINIADMDRNFFHDANLTIAQHPSETEQRMMLRLLAWICHADENLRFTKG
LSADDEPEIWRRNDTMELELWIELGLPDEKRLKKACNQSRSVVLYAYSERAAQVWWSAIS
GKVSGYKNLAIRFLDDNQLAQLAGLVQRTMALQATIQEGTIWLSDDKNSLEIAFSEWKIP
QTQG