Protein Info for HER17_RS16180 in Pectobacterium carotovorum WPP14

Annotation: sulfite exporter TauE/SafE family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 241 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 29 to 56 (28 residues), see Phobius details amino acids 67 to 86 (20 residues), see Phobius details amino acids 93 to 116 (24 residues), see Phobius details amino acids 125 to 149 (25 residues), see Phobius details amino acids 161 to 181 (21 residues), see Phobius details amino acids 189 to 207 (19 residues), see Phobius details amino acids 219 to 237 (19 residues), see Phobius details PF01925: TauE" amino acids 5 to 235 (231 residues), 91.8 bits, see alignment E=2.8e-30

Best Hits

KEGG orthology group: K07090, (no description) (inferred from 96% identity to pct:PC1_0979)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (241 amino acids)

>HER17_RS16180 sulfite exporter TauE/SafE family protein (Pectobacterium carotovorum WPP14)
MTTMMVVFLLAGVVKGVIGLGLPTIAMGLLTLAMPAASAAGLLIVPSLVTNIWQLACGPA
FLSLIKRFWTLFAGIIIGTFWNGLPALTSSSSWTSAALGGILVVYGLWGIMATTLPQPGR
HEIWLSPLVGYITGAITAATGVFVIPAVPYLQCLRLNKNDLVQALGLAFTVSTLGLALQL
MQGIGLQGIDLWQSMLALIPALLGMMMGQRLRHAISEPVFRRCFFIGLVALGGYMAARGL
L