Protein Info for HER17_RS15905 in Pectobacterium carotovorum WPP14

Annotation: YajQ family cyclic di-GMP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 163 PF04461: DUF520" amino acids 2 to 162 (161 residues), 223 bits, see alignment E=1.2e-70

Best Hits

Swiss-Prot: 98% identical to Y1036_PECCP: UPF0234 protein PC1_1036 (PC1_1036) from Pectobacterium carotovorum subsp. carotovorum (strain PC1)

KEGG orthology group: K09767, hypothetical protein (inferred from 98% identity to pct:PC1_1036)

Predicted SEED Role

"FIG001943: hypothetical protein YajQ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (163 amino acids)

>HER17_RS15905 YajQ family cyclic di-GMP-binding protein (Pectobacterium carotovorum WPP14)
MPSFDIVSEIDMQEVRNAVENATRDLSTRWDFRNVPASFELNEKSQSIKVASESDFQVQQ
LIDIMREKLLKRGIEGGALEVPEEFEHSGKTYSVEAKLKQGIETTQAKKIVKLIKDSKLK
VQAQIQGEQVRVTGKSRDDLQGVMALIRGGNLGQPFQFTNFRD