Protein Info for HER17_RS15490 in Pectobacterium carotovorum WPP14

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 809 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 243 to 264 (22 residues), see Phobius details amino acids 294 to 317 (24 residues), see Phobius details amino acids 336 to 356 (21 residues), see Phobius details amino acids 379 to 399 (21 residues), see Phobius details amino acids 403 to 429 (27 residues), see Phobius details amino acids 451 to 473 (23 residues), see Phobius details amino acids 686 to 707 (22 residues), see Phobius details amino acids 731 to 752 (22 residues), see Phobius details amino acids 772 to 795 (24 residues), see Phobius details PF02687: FtsX" amino acids 247 to 362 (116 residues), 39.5 bits, see alignment E=5e-14 amino acids 688 to 799 (112 residues), 44.8 bits, see alignment E=1.2e-15

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 98% identity to eca:ECA1224)

Predicted SEED Role

"FIG00809136: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (809 amino acids)

>HER17_RS15490 ABC transporter permease (Pectobacterium carotovorum WPP14)
MIWRWFWREWRSPSLLIVWLALTLAVACVLALGTISDRMEKGLSQQSRDFLAGDRVLRAS
RPVAEDWLLDAQQRGLTLSRQISFMTMTFAGDTPQLAQVKATDQRYPLYGNLQTRPEGLH
AEAGTVLVAPRLLALLGLKVGDMLDVGDTSLRISGELIQEPDSGFNPFETAPRILMNLDD
VEKTGAIQPGGRITWRYMFSGNEKQISEFSNFIKPQLKPDQRWYGMEDSEGALSQSLKRS
QQFLLLSALLTLLLSIAAVAVAMGHYCRSRYDLVAILKTLGAGKQALRRLIIGQWLSVLG
LAAVCGSVLGLGFEALLMKMLAPVLPAALPASGLWPWVWALGSLVLISLLVGLRPYRLLL
ATQPLRVLRQDVVANVWPLRYYLPIVLIIVVGLLAVLSGGGVLLWSLLGGVAVLSLLLGV
IGWGGLLLLRRLTVKRLALRLAINRLLRQPWSTLSQLAAFSLSFMLLALLLVMRGDLLER
WQQQLPPGSPNYFLLNITAEQVPQMREFLSQHDVTPEQFFPIIRARLTEINQQVATEVIH
EDDPGGNTVNRELNLTWMNGIPQHNVLVEGEAPKTGEVSMEAKEAKEMGIKIGDTLTFTG
DTQPFSATVTSFRQVDWESLRPNFFFIFPVGALDNQPQSWLTSFRYDGDEKMITQLNRQF
PTVSVLDIGSILRQVGQVLQQVSRALEIMVILVLFCGVLLLLAQIQVGMRQRRQELMVYR
TLGAGLRLLRTTLWCEFAVLGLVAGTAAAIGAESALWLLQRKVFNFAWEPNIGMWVALPL
IAAFLLSLCGGWLGLRLLRGKALFRQFAG