Protein Info for HER17_RS14550 in Pectobacterium carotovorum WPP14

Annotation: glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 342 PF00534: Glycos_transf_1" amino acids 176 to 314 (139 residues), 99.6 bits, see alignment E=2.3e-32 PF13692: Glyco_trans_1_4" amino acids 185 to 314 (130 residues), 85.7 bits, see alignment E=5.7e-28 PF20706: GT4-conflict" amino acids 211 to 292 (82 residues), 37.3 bits, see alignment E=2.5e-13

Best Hits

KEGG orthology group: None (inferred from 87% identity to pct:PC1_1310)

Predicted SEED Role

"glycosyl transferase, group 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (342 amino acids)

>HER17_RS14550 glycosyltransferase (Pectobacterium carotovorum WPP14)
MYDIIFVTHLPAFYKINLYNEIAKNKKILVLFISSGSEIRNDDFIKGTMNFEYQFINQGG
FELRRKYSSLLQLLKLLRSVQYQKIVIGGWDLIEFWGIAFTSPRKKNAVVIESTRYESQV
SGLKGKIKKLFLSRISTAFCSGAPHRELIESLSFPGEIITTYGVGLNNHAMDSHVKHDKH
TYRGRFLYVGRLSEEKGLDFLLDFFCKRPELSLTIVGDGPQRESLERKAGENIQFKGYVN
NSELNSIFVEHDVFIFPSTSEPWGLVVEEALVYGLPVICSDKVGCGHDLVEAYKAGIVFS
ANDTASLSNAISEMGERYTEFCSNTSMINFSEINKKQIESYY