Protein Info for HER17_RS13920 in Pectobacterium carotovorum WPP14

Annotation: ABC transporter ATP-binding protein/permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 591 transmembrane" amino acids 38 to 59 (22 residues), see Phobius details amino acids 71 to 91 (21 residues), see Phobius details amino acids 146 to 169 (24 residues), see Phobius details amino acids 175 to 192 (18 residues), see Phobius details amino acids 274 to 300 (27 residues), see Phobius details PF00664: ABC_membrane" amino acids 44 to 302 (259 residues), 45.8 bits, see alignment E=6.7e-16 PF00005: ABC_tran" amino acids 366 to 515 (150 residues), 98.4 bits, see alignment E=5.6e-32

Best Hits

KEGG orthology group: K06147, ATP-binding cassette, subfamily B, bacterial (inferred from 89% identity to pct:PC1_1441)

Predicted SEED Role

"Inner membrane ABC-transporter YbtQ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (591 amino acids)

>HER17_RS13920 ABC transporter ATP-binding protein/permease (Pectobacterium carotovorum WPP14)
MINENHSSITAWLSAWWHTYRQLERVTGSQAHVFRRCCLSLLAAAITQGLALACLFPLLS
AFTGSADSREIAMWLAIMTILSLLTLVLRWYGQGFEYRGQLAAATHELRMRLGEQLRSMP
LTTLQSARAGDINALLLGSVDENLNYMLAIVNQLLLAIVTPVVIALVMLLVEWRLGVGLL
LIFPAIALLYRWRRSAFARTMQALAEANQRTSADIVEYVQGLAVLRTSCQQAERTSALRQ
RFQHLQQIQTSAHRHGAKPGAVVASVVELGLQGVLIFGISGVVVGAWDIAIVAAMMVIVV
RFSEPLATFVSYTAVLELIDTALHRIDELLAIEPLPVHQPAEVPTTYTITFEQVSFRYAD
EAEAVLDRVDIALPEKGMTALVGPSGSGKTTITRLLMRHMDPQHGRVCIGGVDIRCIPTR
ELNRLISVVFQDVYLFDDSVLANIRMALPDASDAEVEQAADAAQCLAFIQRLPQGWQTRL
GDIGGRLSGGERQRISIARALLKDAPIVILDEPTAALDTESELAVQRAIDRLVQDKTVIV
IAHRLSTIVGAHRILVVENGAISQQGTHNELLGVEGRYRALWKAQQSISLK