Protein Info for HER17_RS13670 in Pectobacterium carotovorum WPP14

Annotation: flavodoxin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 221 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF03358: FMN_red" amino acids 71 to 188 (118 residues), 25 bits, see alignment E=2.5e-09 PF12682: Flavodoxin_4" amino acids 72 to 185 (114 residues), 51.8 bits, see alignment E=1.5e-17 PF02525: Flavodoxin_2" amino acids 103 to 160 (58 residues), 28.2 bits, see alignment E=3.1e-10

Best Hits

KEGG orthology group: None (inferred from 81% identity to ddc:Dd586_2645)

Predicted SEED Role

"Putative exported protein precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (221 amino acids)

>HER17_RS13670 flavodoxin (Pectobacterium carotovorum WPP14)
MRLSPMRLITLRLFVLLAISANCLSATAAQPQVGKRILIVYFSQPEDVTLESVDGVSGAS
VLQKNNERLGSTQYIAQIIQQQTRGELFRIETVTPYPVQHDPLLQYAEKEQKENARPVMK
AKVQNLTDYDTVFIGYPIWWYKMPMVLYSFLEQHDLQGKTIIPFTTHGGSRFSDSLREIA
RLQPNSQLITEGLAISRNDVTDDETITDVINWLGKLPREQK