Protein Info for HER17_RS13495 in Pectobacterium carotovorum WPP14

Annotation: glutathione ABC transporter permease GsiD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 301 transmembrane" amino acids 36 to 59 (24 residues), see Phobius details amino acids 102 to 127 (26 residues), see Phobius details amino acids 137 to 157 (21 residues), see Phobius details amino acids 163 to 181 (19 residues), see Phobius details amino acids 219 to 244 (26 residues), see Phobius details amino acids 265 to 287 (23 residues), see Phobius details PF12911: OppC_N" amino acids 23 to 76 (54 residues), 57.3 bits, see alignment E=1.1e-19 PF00528: BPD_transp_1" amino acids 117 to 300 (184 residues), 111.8 bits, see alignment E=3.3e-36

Best Hits

Swiss-Prot: 94% identical to GSID_PECAS: Glutathione transport system permease protein GsiD (gsiD) from Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)

KEGG orthology group: K13891, glutathione transport system permease protein (inferred from 97% identity to pct:PC1_1493)

MetaCyc: 78% identical to glutathione ABC transporter membrane subunit GsiD (Escherichia coli K-12 substr. MG1655)
RXN0-11 [EC: 7.4.2.10]

Predicted SEED Role

"Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.10

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (301 amino acids)

>HER17_RS13495 glutathione ABC transporter permease GsiD (Pectobacterium carotovorum WPP14)
MRHWRRKAMLATLPVIRDKPVRTPWREFWRRFLRQHVAVTAGVFVLLLIVVAFLAPYLMP
YDAENYFDYERLNEGPSAAHWLGVDSLGRDIFSRILMGTRISLAAGILSVLVGMIIGTTL
GLVAGYYEGWSDRIIMRLCDVLFAFPGILLAIAVVAIMGSGMANVIVAVAIFSIPAFARL
VRGNTLVLKQLTYIESARSIGASDRTILFRHILPGSVSSIVVFFSMRIGMSIITAASLSF
LGLGAQPPMPEWGAMLNEARSDMVIAPHVAIFPSLAIFLTVLAFNLLGDGLRDALDPKLK
S