Protein Info for HER17_RS12905 in Pectobacterium carotovorum WPP14

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 465 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 44 to 63 (20 residues), see Phobius details amino acids 75 to 93 (19 residues), see Phobius details amino acids 104 to 125 (22 residues), see Phobius details amino acids 136 to 156 (21 residues), see Phobius details amino acids 162 to 184 (23 residues), see Phobius details amino acids 197 to 216 (20 residues), see Phobius details amino acids 228 to 246 (19 residues), see Phobius details amino acids 267 to 290 (24 residues), see Phobius details amino acids 302 to 324 (23 residues), see Phobius details amino acids 332 to 351 (20 residues), see Phobius details amino acids 362 to 384 (23 residues), see Phobius details amino acids 405 to 426 (22 residues), see Phobius details amino acids 432 to 455 (24 residues), see Phobius details PF07690: MFS_1" amino acids 13 to 410 (398 residues), 150.5 bits, see alignment E=3e-48

Best Hits

KEGG orthology group: None (inferred from 43% identity to cai:Caci_4824)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (465 amino acids)

>HER17_RS12905 MFS transporter (Pectobacterium carotovorum WPP14)
MNNPRWRLCLILLCTTQFVALLDFSITMIPLPQIQDNLGFTPGALQWVINAYGVAIAGFL
LLGGRAADMFGRRRMFLIGLAIFTVGSLLGGFSQSPMMLIATRALQGFGAALFSPSAFSL
LLAVFPEQKQRNRALGAWTAVAASGFVAGLILGGIITDLMGWRWVLWINVPVGLLVIALA
GALPHGKPEAKTIARQLDIGGALLVVAGAATLVYAFANSEHVGLSSPVTFGLIGLALGLL
ALFIWVESKVETPLMPLSIFWRRMTGGANLVSLLANTALGPTFVVIALYMQELLGFTATQ
TGLGLLPMATAFTLASAWGGPALIARMDTKPVILGGLTLFIGGLALLGASLTSDASWSTS
ILPGTLLAGIGYGIAFPAWTVAGIEGIDAVDHGVAGGMLTTTQEVGSAIGLAVGVAVSIA
VLANGGSAAQGFSYAVLVSASLVVVGLACAALILPGKTAVVEIAR