Protein Info for HER17_RS09665 in Pectobacterium carotovorum WPP14

Annotation: EcsC family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 279 transmembrane" amino acids 85 to 106 (22 residues), see Phobius details amino acids 220 to 240 (21 residues), see Phobius details PF12787: EcsC" amino acids 61 to 252 (192 residues), 104.1 bits, see alignment E=5e-34

Best Hits

KEGG orthology group: None (inferred from 93% identity to pct:PC1_2287)

Predicted SEED Role

"putative protease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (279 amino acids)

>HER17_RS09665 EcsC family protein (Pectobacterium carotovorum WPP14)
MTLLTQQDSLAIRQAIALLEAPSFTIQAANLVGKPIEWSLSKLPAMVKNKIQDVVHSALY
KAVDAALYTLDDEPDRVASPKTHKLVVAASGAVSGFFGAAGLLVELPISTTIMMRSVADI
ARSEGFSLSDFSVKAACVEVFALGGTQESDDAADSAYYTSRAVLADITRHASRELIGIAS
KKSAGKASARMSTSQAGKTLAKLIDAAATRLGVTMTEKMAAQIVPVIGAASGAAINTLFI
HHYQNMAKGHFIIKRLEQQYGEEAIRSAYLEIKKQPLPT