Protein Info for HER17_RS09375 in Pectobacterium carotovorum WPP14

Annotation: sugar-binding transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 314 PF01047: MarR" amino acids 14 to 51 (38 residues), 25.4 bits, see alignment 1.1e-09 PF04198: Sugar-bind" amino acids 64 to 314 (251 residues), 194.7 bits, see alignment E=1.7e-61

Best Hits

KEGG orthology group: None (inferred from 98% identity to eca:ECA1954)

Predicted SEED Role

"Unknown pentose utilization regulator 2, DeoR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (314 amino acids)

>HER17_RS09375 sugar-binding transcriptional regulator (Pectobacterium carotovorum WPP14)
MSKQDEQRLLVKIATLYYSEGMKQAEIAASLHLSQSFVSRAITRCVKEGVVKISVIQPPN
MFMGLEAAIQKRYGIDQAIVVDVADNATLAQIKQAIGSAAAHYVQTSIRPDDLVGISSWS
STLRAMVDSLHPQSVKAQGVIQLLGGVGPNGNVQATILTQTLANQLSCPAYLLPAQSIER
SVEDRARLVTSDEVSSVVDKFSEVSLALVGIGVLEPSQLLKNSGNYYHEAMLQQLAERGA
VGDLCLHYYNAEGEPVLQDDEDPVIGMALPQLRQCPRVVALAGGIEKSAAIRGALTGHYV
DVLITDRLTAETLI