Protein Info for HER17_RS09350 in Pectobacterium carotovorum WPP14

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 365 transmembrane" amino acids 26 to 53 (28 residues), see Phobius details amino acids 58 to 83 (26 residues), see Phobius details amino acids 90 to 116 (27 residues), see Phobius details amino acids 119 to 140 (22 residues), see Phobius details amino acids 148 to 169 (22 residues), see Phobius details amino acids 189 to 215 (27 residues), see Phobius details amino acids 247 to 268 (22 residues), see Phobius details amino acids 276 to 294 (19 residues), see Phobius details amino acids 301 to 320 (20 residues), see Phobius details amino acids 326 to 342 (17 residues), see Phobius details PF02653: BPD_transp_2" amino acids 65 to 339 (275 residues), 159.1 bits, see alignment E=6.2e-51

Best Hits

KEGG orthology group: K10440, ribose transport system permease protein (inferred from 98% identity to pwa:Pecwa_2648)

MetaCyc: 49% identical to putative erythritol ABC transporter membrane protein (Brucella abortus 2308)
7.5.2.-

Predicted SEED Role

"Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (365 amino acids)

>HER17_RS09350 ABC transporter permease (Pectobacterium carotovorum WPP14)
MKTSHLPAASGALSPGKFVRSRESILLLILRLRTFIALFLILGFFAFTVPGFLATGSLII
MVKHIAINAFLALGITFVIITAGIDLSIGATLGLCGMVAGYMITQGIVLPMFGVAIFPSV
WVIVPVVLLIGALIGAINGWIITRYNVAPFICTLGTMYIVRGASMLISGGETFPGLGGNP
QLGNTGFELIGSATILGLPLAIWLMLVLAVVIAYVSRRLPFGRHVYAIGDNERAAELSGV
KVRQVKVWVYTISGFCAAIAGIVVSSQLVASHPATGTAFEMNAIAAVVLGGTSLAGGRGT
ILGTLIGAFVIGILADGLVMMGVSEFWQMVIKGIVIIVAVIIDQMQNRMQHKAAIVSQKA
AAEGT