Protein Info for HER17_RS08540 in Pectobacterium carotovorum WPP14

Annotation: PepSY domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 507 transmembrane" amino acids 45 to 69 (25 residues), see Phobius details amino acids 190 to 209 (20 residues), see Phobius details amino acids 238 to 259 (22 residues), see Phobius details amino acids 414 to 432 (19 residues), see Phobius details amino acids 451 to 474 (24 residues), see Phobius details amino acids 477 to 497 (21 residues), see Phobius details PF03929: PepSY_TM" amino acids 44 to 437 (394 residues), 231.5 bits, see alignment E=9.8e-73

Best Hits

KEGG orthology group: None (inferred from 90% identity to pct:PC1_2525)

Predicted SEED Role

"Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (507 amino acids)

>HER17_RS08540 PepSY domain-containing protein (Pectobacterium carotovorum WPP14)
MSHPNQASATAAASGSRPAGETPSDKHAMDNVSPRAAIVALFIRLHFYIGIFVGPFIFVA
ALTGTLYVLTPQIENRLYSHQLFTESQGTPHSLSEQIHAAQAGLAHRQDAKLLAIRPAPA
AGETTRVMFALPELGPSESHAVFIDPVSLENRGSEIVYGTSGILPFRTWLDYLHRGLLLG
DVGRNYSELAASWLWVAALGGIVIWWSTRHLSSATKRRKLKNSQTTTAKTQRLRHWHATM
GLTLMLGLLFFSVTGLTWSQWAGSNISVARTALGWQTPSVNTQLPTPMSHHDMMHGHDMA
MTTDEHAEHHASMPIEDVDAASPALFDEVLAAARDAGIDANKIEIRPATKPHRAWTVTEI
DRSWPTQVDAVSVNPDTLEIIDKTDFNTFPLAAKLTRWGVDAHMGVLFGLPNQLILAAFG
LGLCTMIVWGYRMWWIRRPKSRHDANPVNTLTATLLLVPVVHRVLIALITLLLAVSLPVM
GISLLIFLLIDVVRWYMNHPKQTIATS