Protein Info for HER17_RS04310 in Pectobacterium carotovorum WPP14

Annotation: amino acid ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 254 transmembrane" amino acids 20 to 44 (25 residues), see Phobius details amino acids 74 to 94 (21 residues), see Phobius details amino acids 119 to 138 (20 residues), see Phobius details amino acids 187 to 208 (22 residues), see Phobius details amino acids 223 to 241 (19 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 14 to 91 (78 residues), 42.4 bits, see alignment E=4.1e-15 PF00528: BPD_transp_1" amino acids 63 to 248 (186 residues), 86.1 bits, see alignment E=1.3e-28

Best Hits

KEGG orthology group: K02029, polar amino acid transport system permease protein (inferred from 98% identity to pct:PC1_3356)

Predicted SEED Role

"Amino acid ABC transporter, permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (254 amino acids)

>HER17_RS04310 amino acid ABC transporter permease (Pectobacterium carotovorum WPP14)
MTGFRWEIIQEYAPLFMEGTWMTIKCTIICVILGTCWGLTLGLGRLAQAPHGPWKYILHY
GVQWPVRIYISAFRGTPLFVQIMVVHFALVPLFINPRDGLLVTSNIMSVDFARTLRSDYG
AFLSCVVAITLNAGAYVSEIFRAGIQSIDHGQMEASRSLGMSYGRTMRKVILPQAFRRML
PPLGNNAIAIVKDSSLASAIGLADLAYAARTVSGAYATYWEPYLTISIVYWVITFLLSLL
VRHMEMRFGKSDSR