Protein Info for HER17_RS04005 in Pectobacterium carotovorum WPP14

Annotation: glycerol-3-phosphate 1-O-acyltransferase PlsY

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 211 transmembrane" amino acids 6 to 28 (23 residues), see Phobius details amino acids 51 to 74 (24 residues), see Phobius details amino acids 80 to 100 (21 residues), see Phobius details amino acids 111 to 175 (65 residues), see Phobius details TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase" amino acids 2 to 195 (194 residues), 267.6 bits, see alignment E=3.4e-84 PF02660: G3P_acyltransf" amino acids 11 to 184 (174 residues), 181.9 bits, see alignment E=5.1e-58

Best Hits

Swiss-Prot: 98% identical to PLSY_PECCP: Glycerol-3-phosphate acyltransferase (plsY) from Pectobacterium carotovorum subsp. carotovorum (strain PC1)

KEGG orthology group: K08591, glycerol-3-phosphate acyltransferase PlsY [EC: 2.3.1.15] (inferred from 97% identity to pwa:Pecwa_3570)

Predicted SEED Role

"Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY" in subsystem Glycerolipid and Glycerophospholipid Metabolism in Bacteria

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.3.1.15

Use Curated BLAST to search for 2.3.1.15

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (211 amino acids)

>HER17_RS04005 glycerol-3-phosphate 1-O-acyltransferase PlsY (Pectobacterium carotovorum WPP14)
MSVTALGMMLIAYLCGSISSAILFCRIAGLPDPRQHGSGNPGATNVLRIGGKAAAATVLV
FDVLKGMLPVWAAYELGIPPLYLGLTAIAACLGHIYPVFFHFRGGKGVATAFGAIAPIGW
DLTGLMTGTWLLTVLLSGYSSLGAIVSALIAPFYVWWFKPQFTFPVAMLSCLILMRHHDN
IQRLWRGQESKIWNKLRKKKQPEDEQTSPEE