Protein Info for HER17_RS03985 in Pectobacterium carotovorum WPP14

Annotation: translocation/assembly module TamB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1345 transmembrane" amino acids 39 to 59 (21 residues), see Phobius details PF04357: TamB" amino acids 1009 to 1345 (337 residues), 244.2 bits, see alignment E=1.4e-76

Best Hits

KEGG orthology group: K09800, hypothetical protein (inferred from 96% identity to eca:ECA3595)

Predicted SEED Role

"Uncharacterized protein YtfN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1345 amino acids)

>HER17_RS03985 translocation/assembly module TamB (Pectobacterium carotovorum WPP14)
MMDEKNEKKAQDSVAEENAAQDNAPTTPARKGRWWKRAGIGIVAFLLLLVVGLGLLVGTT
PGLHLLLNTAARVVPGLDIASVSGGWRDLTLKNVSYEMPGVTVKSDEFHLSLALGCLRKS
QLCINDLSANRVDVVVDTKALPVAAEPPPPSEPVTEISTPFPISLRQLTLSNVQVTVDDT
AISLGEFRTGMQWEGRALTLLPTKISALLVALPKTPVDVLEDGKVTAAEMASVIKETAAN
VREAAEQGSSQTLQIDKVLEANNTVAAATTTTPIPTASTPTTDSASDKPAEPEQPLGERL
SELFSKPLLPDLPQFTLPLDLNIVEIHGEQLRLTGDQDILINNLFVQASTQQQHLRLDKL
IVQSPQGGLNVRGEATLSDNWPVSLTANGVLNVDPLKGEKLKLTVDGGLREQLNVALNLS
GPQRAQLELQTQLAEAGLPLALTLQTERVRWPLTGATQYQADNIRLRFNGKVTDYALSLR
GDLSGADIPPATLLLDGKGNEQQFTLSRLRLAALQGNADLSALIDWSKAISWRSELLLNG
INTAKQWPEWPAKVDGKITTRGSVYGGSWQLQVPELRLDGNVKANKLTARGELRGNAAGQ
WTIPALNLALGRNQLNVKGDLSDKWQLDADINAPSLDGMLPGLAGRAIGTLKLRGNLREP
QMLADITASGLRWQAMTISSVRVEGDVRSEQQIQGKLTVRLEVLKQDGLNIALLTLDASG
NEKQHQLRLTMQGEPVAGQLALSGSFDRQEQRWRGTLNNTRFDTPVGEWRLTQDMALDYL
NAQQKITIGTHCWRNPNAELCVPKAIEAGPSGQASIRLNRFDLAMLKPFLTADTVLAGTF
TGGADISWQAGQGLPQAKVSLVGNGVSVRQQMQGNTLPIDFDTFTLNAGLDRGRAQLGWL
MAIRENGRFSGDIQVTDPQGRRNLGGSVTINSISLALLNPALSKGEKAAGILNANLRLAG
DAARPQLFGQMVLERLDIDGNWMPIDLTNGRLAVNFSGMSSTLQGFLKTNNGQLNLGGNA
DWSRPDAWRARIAAKGQKLRVTVPPMARLDVSPDIVFEATPQLFALNGSVSIPWARIAVK
DMPESAVAVSSDEVMLDAERQPLKKASAAIPINSNLTIRVGNDVQLDAFGLAARLQGDLK
MVQDERGLGLNGQIDIPSGRFKAYGQDLIVRKGLILFSGPPDQPILNIEAIRNPDNTAND
VIAGVRVTGMAATPKLEVFSDPAMSQQEALSYLLRGQGLDSGGADSSAMTSMLVGLGVAQ
SGQVVGKIGEAFGVSNLALDTQGVGDNSQVVVSGYVLPGLQVKYGVGIFDSLATLTLRYR
LMPKLYLEAVSGISQALDVLYQFEF