Protein Info for HER17_RS03520 in Pectobacterium carotovorum WPP14

Annotation: sugar ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 332 transmembrane" amino acids 38 to 65 (28 residues), see Phobius details amino acids 112 to 132 (21 residues), see Phobius details amino acids 144 to 164 (21 residues), see Phobius details amino acids 194 to 216 (23 residues), see Phobius details amino acids 239 to 262 (24 residues), see Phobius details amino acids 299 to 324 (26 residues), see Phobius details PF00528: BPD_transp_1" amino acids 123 to 328 (206 residues), 59.7 bits, see alignment E=1.7e-20

Best Hits

KEGG orthology group: K02025, multiple sugar transport system permease protein (inferred from 98% identity to eca:ECA3747)

Predicted SEED Role

"sugar ABC transport system, permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (332 amino acids)

>HER17_RS03520 sugar ABC transporter permease (Pectobacterium carotovorum WPP14)
MKKIALLPAGSLIDKLVTPVEKAVNLLQKLGGRKVMPWFFIAPNMLLFAVFVFIPILLAV
CYAFTGGTNILLWERPYVGVENFSTLLSCGNYAEPSTCEQDLFWTGVYNTVSFTFFNVLC
TLLVALVTALILNRKIIARGFFRAMFFYPVLLSPVVVGLIWQWFLNRNGLLNLVLSSLGG
QPITFLLDPTFSRFWVVFVSVWFHVGFYTLILLAGLQAIPRDIYEAAAVDGTSRWRGFYR
LTLPLLAPNILVVVILLTINSVQIFDEAWVLTNGGGPGTANSFIVQYIYQTAFSSNASLY
GLASAASVLMGVVLMILTALQFLLTRRLEGKK