Protein Info for HER17_RS02845 in Pectobacterium carotovorum WPP14

Annotation: molecular chaperone DnaJ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 377 TIGR02349: chaperone protein DnaJ" amino acids 5 to 347 (343 residues), 470.9 bits, see alignment E=1.6e-145 PF00226: DnaJ" amino acids 5 to 67 (63 residues), 96.4 bits, see alignment E=1.3e-31 PF01556: DnaJ_C" amino acids 118 to 331 (214 residues), 186.8 bits, see alignment E=3.8e-59 PF00684: DnaJ_CXXCXGXG" amino acids 145 to 205 (61 residues), 66.4 bits, see alignment E=3.4e-22

Best Hits

Swiss-Prot: 98% identical to DNAJ_PECCP: Chaperone protein DnaJ (dnaJ) from Pectobacterium carotovorum subsp. carotovorum (strain PC1)

KEGG orthology group: K03686, molecular chaperone DnaJ (inferred from 97% identity to eca:ECA3881)

MetaCyc: 89% identical to chaperone protein DnaJ (Escherichia coli K-12 substr. MG1655)
1.8.4.-

Predicted SEED Role

"Chaperone protein DnaJ" in subsystem Heat shock dnaK gene cluster extended or Protein chaperones

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (377 amino acids)

>HER17_RS02845 molecular chaperone DnaJ (Pectobacterium carotovorum WPP14)
MAKQDYYESLGVAKNADEREIKKAYKRLAMKYHPDRNQGDSAAEAKFKEIKEAYEILTDS
QKRAAYDQYGHAAFEQGGMGGGGGFGGGGADFGDIFGDVFGDIFGGGRRQRASRGSDLRY
NMELTLEEAVRGVTKEIRIPALEECDVCHGNGAKPGSSPITCPTCHGNGQVQMRQGFFTV
QQACPHCHGRGKIIKDPCVKCHGHGRVEKSKTLSVKIPAGVDTGDRIRLSGEGEAGEHGA
PSGDLYVQVQVKAHPIFQREENNLYCEVPINFAMAALGGEIEVPTLDGRVKLKVPAETQT
GKLFRMRGKGVKSVRGGAQGDLLCRVVVETPVNLNERQRQLLQELDESFGGPSGERNSPR
SKNFFDGVKKFFDDLTR