Protein Info for HER17_RS01865 in Pectobacterium carotovorum WPP14

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 293 transmembrane" amino acids 31 to 52 (22 residues), see Phobius details amino acids 94 to 120 (27 residues), see Phobius details amino acids 132 to 151 (20 residues), see Phobius details amino acids 157 to 174 (18 residues), see Phobius details amino acids 196 to 215 (20 residues), see Phobius details amino acids 217 to 238 (22 residues), see Phobius details amino acids 259 to 280 (22 residues), see Phobius details PF12911: OppC_N" amino acids 26 to 69 (44 residues), 40.5 bits, see alignment 1.9e-14 PF00528: BPD_transp_1" amino acids 110 to 292 (183 residues), 113.7 bits, see alignment E=8.8e-37

Best Hits

Swiss-Prot: 46% identical to DDPC_ECOLI: Probable D,D-dipeptide transport system permease protein DdpC (ddpC) from Escherichia coli (strain K12)

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 98% identity to pct:PC1_3865)

MetaCyc: 46% identical to dipeptide ABC transporter membrane subunit DppC (Escherichia coli K-12 substr. MG1655)
ABC-8-RXN [EC: 7.4.2.9]

Predicted SEED Role

"Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.9

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (293 amino acids)

>HER17_RS01865 ABC transporter permease (Pectobacterium carotovorum WPP14)
MRTPPEKRVSRLRLRGARIGGFLLTMMRNPLTAIGSAIVLMLILVAIFAPWIATHDPLAQ
DLANALQAPSAAHYFGTDEFGRDVFSRLVYGSRITLYIVALVSVTVGPIGLALGVVAGYY
GGIVDTILMRITDIFISFPSLVLALAFVAALGPGLEHVVIAITLTAWPPIARLARAETLS
LRHADFVSAVKLQGASSIRILLHHIVPLCLPSVIIRITMNMAGIILTAAGLGFLGLGAQP
PDPEWGAMISAGRRYMMECWWLVTIPGLAILINSLAFNFLGDGLRDILDPRTE