Protein Info for GFF984 in Xanthobacter sp. DMC5

Annotation: putative protein YcjX

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 488 PF04317: DUF463" amino acids 30 to 487 (458 residues), 557.1 bits, see alignment E=1.6e-171

Best Hits

KEGG orthology group: K06918, (no description) (inferred from 85% identity to xau:Xaut_4117)

Predicted SEED Role

"Amino acid regulated cytosolic protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (488 amino acids)

>GFF984 putative protein YcjX (Xanthobacter sp. DMC5)
MAFFTDAVDDARIALQALADRVEGIAHPTLRLGVTGLSRAGKTIFTTALIHALTKGARMP
VFEPYQSGRIARAELQPQPDDAVPRFAYEGHLEMLGAERRWPSSTTRVSELRLAIRYATR
RGSLKTLTLDIVDYPGEWLLDLPLLNMSYADFARQSLALARAQARAEVAAPFLAAVAEAP
ASGPADEARAREVAARFTTYLAACRSERLAMSLLPPGRFLMPGDLEGSPALTFAPLDVKD
APSRADTLGGMMERRFEAYKHAVVRPFFRNHFARLDRQIVLVDTLSALNAGPAALADLER
ALDGILAAFRTGRNSLVSTLFRPRIEKVLFAATKADHLHRASHDRLEAVLGRLVERARER
AQDRGATLDVVALAAIRATREARVQRGGHELDAIVGTPEAGQEAGGHIFDGEEEVAVFPG
ELPADPDALFDPSGAGFRGLASSIAGDGQDDVDFRFLRFRPPAGIGDAPIPHIRLDRALQ
FLLADRLA