Protein Info for GFF979 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1442 transmembrane" amino acids 131 to 151 (21 residues), see Phobius details amino acids 171 to 193 (23 residues), see Phobius details PF01442: Apolipoprotein" amino acids 291 to 455 (165 residues), 30.1 bits, see alignment E=3.8e-11 amino acids 469 to 605 (137 residues), 34 bits, see alignment E=2.4e-12 amino acids 598 to 747 (150 residues), 36.4 bits, see alignment E=4.4e-13 amino acids 727 to 873 (147 residues), 26.2 bits, see alignment E=6.3e-10

Best Hits

KEGG orthology group: None (inferred from 78% identity to xau:Xaut_4123)

Predicted SEED Role

"Kinesin-like protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1442 amino acids)

>GFF979 hypothetical protein (Xanthobacter sp. DMC5)
MKNPKKIQDPTEAALSAIQEALTLELDNAEANAAAAKGGEAPLPPDRGTPLDRPPAPERV
LSGPGPQREGRPINRRPRPPEGGEVRVDGGRREGAPRPPRSDAERRAANDDRQPIGQLLG
QLQKKPPVTPFYWATGVSLAWIVIGIIFAYTVHHGLMASSNGLQSLGDSPALLGIFAGIL
IPPLAFFGMASIVRRSMELQGIARSMTEVALRLAQPESIATESVVTVGQAVRREVAAMGD
GMDRAVARAGELEAMVRAEVATLERAYEENETRIRTLIDDLQSERHNIQIETERLREGII
AAETVLSSEVKDVASRIHTTMMEASEQVTEILGQKGEHITAALARVGDSMIDSLTAKGGE
LIDRLQLTGSDIRQDLSESGELLVETLRSRTDDLASNLLATTTDVSQLVERWGDEVNTNI
DRLKQGITDTLADNVGRFADDIDVRVAEVNSAFRATSESAVVEFSTRGGELVRKLEETGE
RVAETLAVRGTDLADRIEATGNRIYEAVAVRGEDLQQRLSETGDRITSSLDRSSNQVVTA
LVDKSHEVAASLNGAGEDMTERLSRVATEVTQAIGARGSKVTEAFRETADILVATIGTKS
DAIKEMLTARLKAMEETITVRGAELADRMQHDAAHLARAMQDGVKNFDTTVKVHAPELVD
QITHRVALVNENLRLATSTLDERLSATTDTVATIMDQRFSRIEQTLDQRAQSLTETLATR
TVNFARTIAEGTKNATESLDKSVETLENFFATRSKALGEVLTDRADAVNRNIGVRAQEIA
SVLDGRVHRIEELVLGRLDGVATSLEVRGTAIADALVGRIETVSGALRAEASEVERSLTT
LSGNVSRTLTEHSEKVADNLGTRLNEIAHLIDDKNGTFLSALERTSQRAVTEITATNTAL
RTDVGVIIERLDDANATFQGALTQAVSNLDAFAGTFARQVESFGGAVSGITLSADATAER
FQSQIGSLKEVSATALAQMSSLSERLDQNRRLMDEAAQTLASTHDQVDSTLSSRREAMEQ
LARSLAQRVGDVESRLVAFHTMLDETYEASQQRAVEIAGVIASATSGSTEAVAQQLALVR
TAADAERERSAAALRETYEVALADVHTLFGETGNRFTAVATDLKRVAEDVQQAITLAREE
MKRGILELPAETEASAATMRRAVAEQIKALAELNEIVARQGQALDVVEASARAAQQETTR
AAREASRETTALRSRPEREPRAESTRAELQRSEPARAEASRQDLTRSETGRSEQARTEGA
SLLQAELRRAPANRRAEPAERPASRPAARAESNGEERDSWLTELLARASGDLDEDAPRST
RAAAPAPAAAPESLDDLSTDIARMVDHQAAVEMWDRHNNGESHVFSRRLYTMQGQQTFDA
LKRRYRADAGFRETVDRYVAEFERLIDQVSGDDRGSTLARTYLTSDTGKVYTMLAHASGR
LD