Protein Info for PS417_04925 in Pseudomonas simiae WCS417

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 421 transmembrane" amino acids 36 to 54 (19 residues), see Phobius details amino acids 73 to 92 (20 residues), see Phobius details amino acids 104 to 122 (19 residues), see Phobius details amino acids 128 to 149 (22 residues), see Phobius details amino acids 161 to 180 (20 residues), see Phobius details amino acids 192 to 212 (21 residues), see Phobius details amino acids 233 to 255 (23 residues), see Phobius details amino acids 271 to 291 (21 residues), see Phobius details amino acids 299 to 320 (22 residues), see Phobius details amino acids 326 to 347 (22 residues), see Phobius details amino acids 358 to 380 (23 residues), see Phobius details amino acids 387 to 408 (22 residues), see Phobius details TIGR00896: cyanate transporter" amino acids 38 to 388 (351 residues), 485 bits, see alignment E=6.7e-150 PF07690: MFS_1" amino acids 53 to 370 (318 residues), 84.2 bits, see alignment E=4.3e-28

Best Hits

KEGG orthology group: K03449, MFS transporter, CP family, cyanate transporter (inferred from 85% identity to pfs:PFLU1007)

Predicted SEED Role

"Cyanate transport protein CynX" in subsystem Cyanate hydrolysis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U7D6 at UniProt or InterPro

Protein Sequence (421 amino acids)

>PS417_04925 MFS transporter (Pseudomonas simiae WCS417)
MNLDAPRTPELEQLLIDAEADDDEVQHSPPPVSRPWLLLLGLVLVALNLRPALSSLSPLL
SEVSSSLGLSAARAGLLTTLPVLCLGLFAPLAPILARRFGAERVVLGILLMLAGGIVLRS
AFGEVGLFVGSLIAGASIGIIGVLLPGIVKRDFAKQAGTMTGVYTMALCLGAALAAGASV
PLSDYFGHRWSIGLGFWMLPALLAALCWLPQIGHKHGAHRVAYRVKGLLRDPLAWQVTLY
MGLQSSLAYIVFGWVPSILIDRGLSATDAGLALSGSIIVQLLSALTAPWLATRGKDQRLA
IVVVMLLTLGGLMGCLYAPLDGLWGWAILLGLGQGGTFSLALTLIVLRSRDAHVAANLSG
MAQGIGYTLASLGPLAVGLIHDWTGGWAATGWVFAVIGLGAIVAGLGAGRAKYVGVCSEK
V