Protein Info for GFF97 in Variovorax sp. SCN45
Annotation: Filamentous haemagglutinin family outer membrane protein associated with VreARI signalling system
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
"Filamentous haemagglutinin family outer membrane protein associated with VreARI signalling system"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (4297 amino acids)
>GFF97 Filamentous haemagglutinin family outer membrane protein associated with VreARI signalling system (Variovorax sp. SCN45) MVLNPHTTRSRRFKAEFREPAAGGDLRLTPLSRAVALALAALGAWGPAHASQTFSPAWFA SKGAAQAGAAQTGRLPNGMPASSLTNPAQQQQQANAQLQRSISNLNLAAQAIAAQQAAQA AAREAASKEPSSVPDGLADGGLKVDTNSLTAGWHNAQAPVQSQQADGRTNVAIQQTGDRA ILNWETFNVGRNTTVEFRQQADWAALNRVNDPQARPSQIQGQIKANGTVLVANRNGIVFS GSSQTDTRNLVAAAANISDAQFKANGIHSTKTADSYAPSFTDAGGAVRVEAGARITTSTP ASVKQGGGYVLLMGQEVSNAGTITTPRGQAQLAAGDFFIVRPGQGSAANQASTTRGNEVS PQFNADSAAGHVANTGLMVASEGDITLAGRKVLQDGVALATTTVDTRGTIHLLNSASDKQ GSVTVTQRALNAVLLDDKNGRTALDSQREAAIAESGRQNSLRTATGAFDNLSLLDDRQDL SRIEIVSGGNVLFEGGSMTLATGGQLAVSAGKVGGRSTVADGARLDVSGAVGVQVAMSSN NVQINVQGNEQRDAPLNRDTSKLNNANVWIDRRKLVRVAAGVGGYDKERWYTSGGLLEVG GYLGLQGHGIGEWAAQGGSVTFGGGEVVTQAGSNINLSGGTLDVQTGFIRQSWLKGADGR LYEVSNAPANTSYTGLYKGFEDEHKRWGDKTTGYFYNPLIGPQSRLENGYTVGRDAGRLV VATGAAVLEGDITAVAYQGPRQTAKGDAALDGYAQSHNAAAQAAQVVFGNYTTGYNTDPG QGAVGAFRALAPTFRHIVFDDAQPELGAALSPETALPQERKNTLYLSSKRLSGFGLGAIT ALAEESVTVDDGIAVSPGGSIELFATKVGVNANLIARGGAIVLGNMATPLMRAGLTPRLL PTPAADNPGEVVVAKDAKLDARGLWTNLQLDPANGLGLPYLDGGRVDIRSAGAVTLAAGT SIDVSSGGAVLVDGKTRGGRGGDVTLGADMTLGQSTTHGLLTIDGDIRGYGVNGGGTLKL ISGGGLVVGGQVRGTGGMLSAGDAAPLDLILLQDYQVRAGDVLPLDYLYERTRARPGEAI GAVPIFAIDPAQPVVLAADWKPPEASGGANSSYTLQVIVNGTPRNIAVGRAADGAVIETL PAGSTLVGIVPFTLKMFPLDYVVPANVFPNGIAVTPQNITAAAGKAAPVDFTIASGTQVA AGSVFRQDIATRPNTAIDPSVLQSGFSRYDLNGHLGVIVADNARLDVRMPAYRFADGAKT VATGSDPATGLALWTPPLWSEDAVKGVLTQRGGASLTLQSMVGSGSASTAGGPVAVRPGA AIDVDPGQSIGLLGRDVTVEGTLSAPGGMIAIDRPRSALPGTPGLIWIGDHAVLDVAARA ATARDVFGRTYGQVPDGGTISIGGALDWDKTSEADAADAFIVIRSGARLDASGASAVLDP SGSAPGRAPAPITVASNGGSIVLKSNHGLYLDGTLRAAAGGEGAAGGTLGLALASPVYIK ETTRGDVLRHRELVLAQTQGDSAVAAAQTIADARGDLLTGTARVGVDRIQAGGFGNLSVL VDGALGFDGNVALGMSQSLRLYAGTYAHGETATADSTVSLSAPYVRLAGTARRATGEGTV MPMAHWENGPSRQQGGGQFSVLADLVDLRGTVGFGTRSELNLGLTSYTVDRRGFEEVELT SRGDVRLLGANLVTPGNVRLIAEQLYPGTGTSNTVMAGYVQGADARQSYAAGSVLSIRRH GDGEAAMPYSAFGSITLAAESIEQGGIVRAPLGQLTLGTAFDAVTAATSRVTLLPGSITS VSGEGLLMPYGGTVDGLSYQYNGQPVALKAVGDLERGVKVNTRHLEAQAGSVLDLSGGGS LAGAGFVSGRGGSVDVLKTALANSNPANGYSRAGNAVYAIVPGSAANYAPEAPEAGFGTP GVGQRVTVPAGVPGLPAGTYTLMPSSYSLLPGAFRVEIGAADRIGLSGVTSVGNGSYVAG GYLGVANTSIREALPNQVVITPGDKVRSYSGYNETDYNAFVLADAARRGFLRAGLTSDAK TLDIMLSRPPAEDADRTALKFDGELRLGAQRASTGFGGTVNVRNLGEVLATGQAADEQLA GASVQDRELNKLGGSRLVLNGTLGTSYGQLGRIVPITGAGSLIVRSGASLSAGELILAGA PRQGGGGLTIEEGASLGTIGRGTASYGSNDGYVFTGTGVIALSNGWFNLLLAQPSAAEGP GTVSIDIGSCVSAACNGSTRLVSEGTLAIATGGALTLADNVSYGTRNLSLALAAVNLGED ASIAAASAGGQLPSGLVLNQAKLNRLLAGNTAIGAPALETLILNARDAVNTYGAVKLDAS SLDRLVLGTPAIYGYGAAGDVVAIRAGEFAWAGAEGTPGAAVSGLLGSGTLDIAARSIVL GHGPYAQASGTQTDARLALGFADVKFTASERVTSNGSSTLSVYQRQGAYTPGEGYAHEGG NLVVSSPLLTGQAGSRTRIAAGGAITMVAPPGAGSAASSDALGATLELRGKSIDLEGSVV LPSGRLVLAATDDIVLGASSRIDLSGRKTSLFDVDKYSWGGDLVLSSATGNIAQVGDSVI DVSARNNRGGTVEATALAAGAGRVDLLGAIRGSSSGTYDAGGTVVPYGAGELTVRAQALG DFVDLNNRLNEGGVFGARRFQVKQGDLVVGDGVKAREVSIAVDGGSLRVDGRIDASGLQV GSIRLAAKGDLTVNGTLDAHGTGLRVDSYGKIIDSPNRAIVDLTSTEGMLTLGGGARIDL RAGTDVPLGTRAGQNDGRARGTLDLNAPRVGADDVAVTINGTPAIQGAKTVAVNAFRSYS DAPMADLPDVSGYRPQLVTQGYLDRIDGESRIFIDAAQGNAGLRSRLSGLGSYHLRPGVE IVSDRSTNPHGDLTIDGDLDLSGYRYGPGADRNDPARRGYGEPGRLVIRAAGALNVHGSI NDGFAPPPATLDDNGWVLTRGPSPAFGGDIVVPIDNVVLDTGTTFPAGSTLNYSVSVAAM TLPAGTVLPVDAVLTGTLALPAGTVVAANIYNADGSLAHAAGTVLGSATTLGAGVRLGAG TALRTAAGVAALTWPKGVALPVYMTTTGQTVLARGSLIPSTTVVELPGGQPVNLRPSVNG VQGRNWAVAPMLGEGATSWSVQLVAGADLGSADRRALNPASKAAIRLGDTHAISDYTISA SKRFVWAPNDWGLPEGEEADPGTCELEPSICVEVPGGPPVITGSQIVAPAFSVLRTGTGD LEMLAAGDIRMDSLYGVYTAGTATAADAAYNRPRGKDASGSPIGPQSELLDYSASLATYR AWYPDQGGNVLVAAGGNLVGDLMGSGLSSALPGNWLWRQGSGTAAIDEAIPTAWWINFGA YTATTEKSNRKAPDLTGFTGFGTLGGGDIRIRVGGEAGTIGLRSTQGAGAVSTDRSEGLV VAVGSTGRVGADGTLALTGGGDVDMRIAGALNPNRNLSTGSEKLVLTGAIANLRGATEVS AASIGSLGLQYLSGTFRFSDPVDARGIDPFSASYASAKGGINLVPGDTAIYLQTRGDLVL GGASDPGRGDTPNSSAFSVGGQSPNAGGQGWFSLWTNRSAINLTSAGGHLTPTMAAGDNS QLRTTSKDAWIVYPSIFRAAALTGSLYYGYAALPLTVGDPTKINYGLTLAPSANGELEML AGGSIYAGQYSVGMSGTGTPIPTPFNPAFVGQAYGAGEVLATNLATGGLAIAGARNVPEI TPTLFAFGPNTAAIGIDRAADAAPVRFYAAGGDIIGLKTGEVVTRGTETWYNAAAAIRVM AGRDIVNTGVAPGSSTVGSRDLSGSLRGNLIVHTNPTDVSIVSAGRDILYANFDIAGPGT LEVSAGRNLLQEDRGGITSIGPVVPGDTRPGASVALMAGIGAGALDMSAIRARYLDPSNR AEAGTPLAQQPGKAAKTYEAELAAWLQSRYGFSGGSTAQSLAYFDALAPEQQRIFLREVY YAELRAGGREYNDASSSRAGSYLRGREMIATQFPERDAGGNTIARGGDITMFGGSGVRTN FGGDIEMLAPGGKIILGVQGAVPPSTSGVMTQGQGDIRLFSEGSMLLGLSRVMTTFGGDI LAWSAKGDINAGRGSKTTVLFTPPKLVYDNVGNVEISPQVPSSGAGIATLAPIAEVPPGD VDLIAPLGTIDAGEAGIRVSGNVNVAALQVVNAANIQVKGQSAGLPVVAAVNVGALTNAS AAASQATVAAQEALQRDRAAARQALPSVFTVRVLGFGNEPLGGGGASDDSNGSNNKPSAT PVSYNPRSVIRVLGGGGTLPPAVSRQLTDEERANLQR