Protein Info for GFF959 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 724 transmembrane" amino acids 31 to 48 (18 residues), see Phobius details amino acids 54 to 72 (19 residues), see Phobius details amino acids 78 to 97 (20 residues), see Phobius details amino acids 274 to 297 (24 residues), see Phobius details amino acids 307 to 327 (21 residues), see Phobius details amino acids 338 to 366 (29 residues), see Phobius details amino acids 383 to 389 (7 residues), see Phobius details amino acids 409 to 439 (31 residues), see Phobius details amino acids 451 to 479 (29 residues), see Phobius details amino acids 510 to 532 (23 residues), see Phobius details amino acids 536 to 556 (21 residues), see Phobius details PF13567: DUF4131" amino acids 57 to 202 (146 residues), 35.7 bits, see alignment E=7e-13 PF03772: Competence" amino acids 250 to 534 (285 residues), 194.9 bits, see alignment E=1.8e-61 TIGR00360: ComEC/Rec2-related protein" amino acids 272 to 467 (196 residues), 66.4 bits, see alignment E=2e-22

Best Hits

KEGG orthology group: K02238, competence protein ComEC (inferred from 76% identity to xau:Xaut_4370)

Predicted SEED Role

"DNA internalization-related competence protein ComEC/Rec2"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (724 amino acids)

>GFF959 hypothetical protein (Xanthobacter sp. DMC5)
VLSARGLQRLADALKARLAHDVAAEAASGRLILWLPAAFTAGILLYFGASTEPSLAASLV
LVAAFAAAALGARARPVMFGIAAVLLATAAGFAAGGMRTELIAHEMVVPPKTPVRLSGFI
ERVERRTTGDRILLRLDGDAVRGLASAPALVRLSLRKGWAPPVGSHVTQLAQLLPPSGPA
MPGAHDFGRAPWFQGIGAIGYGLGRPKAAAPRDPPLSVRLAMALDGVRQSLSDRIRASLS
GVPAEVAVALVAGDRSGIPHAVEESMRVSGLSHILSISGLHMALVAGTLFALARGVLALV
PGLALSWPIKSSAALIALAGSAFYLVLSGNDVPAQRSFVMTGLVLAGVLVGRPSLSLRSV
GVAAVVVLSLTPEAALDPGTQMSFAATLALVAAYERLQPLRAIPRPDGIAGAVVSWVAVL
VAGTALTSLVAGLATAPYGIFHFQRVAPYGLLANLAAMPAVSFLVMPAGLAGVLLMPFGW
DHLAWPVMGRGIEIMTAVSDWVGTLPGADIRAAFIGAGTLLWLSLALLALCLLRGVFTLA
ALVPLSLAALVAGAPLKPDLLIAPDAQTVAVRMPDGRLSVLGASGQKLVVEQWLTREGDR
RTAGAKDLAAAFTCDPLGCTAPLPGGGTIAVSRRAEGLEADCLNARMVVTRDAPPRACPA
EVLTPEKLARTGTLAFTLRDGALVAERSRSPSVSRPWMAPLPPDLAPERGAIDAGDPQTD
ATAP