Protein Info for GFF95 in Xanthobacter sp. DMC5

Annotation: Cell division coordinator CpoB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 319 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details TIGR02795: tol-pal system protein YbgF" amino acids 196 to 309 (114 residues), 111.8 bits, see alignment E=1.4e-36 PF13174: TPR_6" amino acids 198 to 227 (30 residues), 16.6 bits, see alignment (E = 2e-06) amino acids 233 to 265 (33 residues), 12.5 bits, see alignment 4.2e-05 amino acids 270 to 301 (32 residues), 26.8 bits, see alignment 1.1e-09 PF13432: TPR_16" amino acids 199 to 258 (60 residues), 30.5 bits, see alignment E=8.2e-11

Best Hits

KEGG orthology group: None (inferred from 77% identity to xau:Xaut_3081)

Predicted SEED Role

"TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (319 amino acids)

>GFF95 Cell division coordinator CpoB (Xanthobacter sp. DMC5)
MKMRLRPVGVLVRTYAVLFGLACASALGAVAPAAAQNDGNLFGNLFKPPQPAQEASREDP
ELMERMERLESTLRQLTGQVEQLQYRNQQLEAQVRRLEEAGGVRPSAAPSAAAPVAAPVQ
APAVLPSGRPAAPPAAPVRRSDAFDPNMDPAAPGAPQPLGSPASATPAPRAVDVAPVRPT
GGQQVAALPSAGATVRELYDAGQSQLQRQDYAGAEQTFRQIIQSSPNDRLIADATFMLGE
SLFLRQNYSDAAASFLEVSTKYQNSARAPEALLRLGQSLAGLGEKETACATFQEVDRKYP
RTASSVRQAVEREQKRVGC