Protein Info for PS417_04695 in Pseudomonas simiae WCS417

Annotation: acriflavine resistance protein B

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1029 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details transmembrane" amino acids 337 to 355 (19 residues), see Phobius details amino acids 362 to 383 (22 residues), see Phobius details amino acids 389 to 412 (24 residues), see Phobius details amino acids 433 to 453 (21 residues), see Phobius details amino acids 466 to 492 (27 residues), see Phobius details amino acids 526 to 545 (20 residues), see Phobius details amino acids 857 to 875 (19 residues), see Phobius details amino acids 882 to 902 (21 residues), see Phobius details amino acids 908 to 932 (25 residues), see Phobius details amino acids 957 to 974 (18 residues), see Phobius details amino acids 986 to 1012 (27 residues), see Phobius details PF00873: ACR_tran" amino acids 8 to 1012 (1005 residues), 1000.2 bits, see alignment E=1.6e-304 PF03176: MMPL" amino acids 297 to 495 (199 residues), 45 bits, see alignment E=1.1e-15 PF02355: SecD_SecF_C" amino acids 338 to 491 (154 residues), 20.8 bits, see alignment E=3.3e-08

Best Hits

KEGG orthology group: K03296, hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family (inferred from 98% identity to pfs:PFLU0960)

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TW91 at UniProt or InterPro

Protein Sequence (1029 amino acids)

>PS417_04695 acriflavine resistance protein B (Pseudomonas simiae WCS417)
MSRSPSAWCVDHPVATLLLTFALVLLGLIAFPRLAIAPLPEAEFPTIQVTATLPGASPDT
MASSVATPLEVQFSAIPGMTQMTSSSALGSSLLTLQFTLTKSIDTAAQEVQAAINTASGK
LPSDMPSLPTWKKVNPADSPVLILSVSSNSMPSTELSDYVETLLARQISQIDGVGQINIT
GQQRPAIRVQASPDKLAAIGLTLADIRLAIQQSSLNLAKGAIYGENSVSTLSTNDQLFHP
EDYAQLIVSYKDGAPVQLRDIAKVINGSENAYVQAWAGDTPGVNLVISRQPGANIVETVD
RIQAELPRLQAMLPASVQVSVLTDRTKTIRASLHEVEVTLLIAILLVVAVMALFLRQLSA
TMIVSSVLGVSLVASFALMYLMGFSLNNLTLVAIVIAVGFVVDDAIVVVENIHRHLEAGL
DKREAAIKGAGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATSTILISVVVS
LTLAPTLAALFMRAPTHHAHDKPGFSERLLAGYARNLRRALAHQRTMAAIFVVTLALAVV
GYVFIPKGFFPVQDTGFVLGTSEAAADVSYPDMVAKHKALAEIVKADPAVAAFSHSVGVT
GSNQTIANGRFWIALKDRGDRDVSASQFIDRIRPKLAKVPGIVLYLRAGQDINLSSGPSR
AQYQYVLKSNDGPTLNTWTQRLTEKLRANPAFRDLSNDLQLGGSITHISIDRQAAARFGL
TATDVDQALYDAFGQRQINEFQTEINQYQVVLELDTQQRGKAESLNYFYLRSPLTNEMVP
LSALAKVDPPTVGPLSISHDGMFPAANLSFNLAPGVALGDAVIMLNQAKNEIGMPTTLIG
NFQGAAQAFQSSLASQPWLILAALVAVYIILGVLYESFVHPLTIISTLPSAGLGALIMLS
LMGQDFSIMALIGLVLLIGIVKKNGILMIDFALEAQRVRGLSPEDAIYEACVTRFRPIIM
TTLAALLGAVPLMLGTGPGAEMRQPLGIAVVGGLLVSQALTLFTTPVIYLYLEKFFHKPK
PTPALATTH