Protein Info for GFF920 in Variovorax sp. SCN45
Annotation: Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K01453, [EC: 3.5.1.46] (inferred from 58% identity to mms:mma_2923)Predicted SEED Role
No annotation
MetaCyc Pathways
- nylon-6 oligomer degradation (4/7 steps found)
Isozymes
Compare fitness of predicted isozymes for: 3.5.1.46
Use Curated BLAST to search for 3.5.1.46
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (409 amino acids)
>GFF920 Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily (Variovorax sp. SCN45) MIQDNTALAAGWRDGFPTAGAAVQRPRERPVFEFPHSRWAFSHLRELQPTRNVPRGNGPV SVLPRAERPELDELRFTLPADGSQTDWRTALETIHADGAVVLHRGRIVYERYFGALDEHG QHMAMSVTKSVVGTVGAMLAADGTLDEHAAVTRYIPELAASAFGQATVRQVMDMTTGIDY SEEYANPDAGVWKHARAGELLPRPAGYAGAEGYRQFLQTVQGQGTHGEAFAYRTVNTDVL GWLISRATGHPVAKVLSELIWSRIGAEQDASFALDGQGAEFAGGGLCTGLRDLARLGETM RLGGFFNGAQIVPEAVVADIRNGADPARFALAGYTRLAGWSYRNMWWVAHDAHRTFTAQG IHGQALHIDPTAEMVVARFASHPLAANAHLPTSMPAFRALAEHLMRHGG