Protein Info for GFF917 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 442 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 58 to 81 (24 residues), see Phobius details amino acids 102 to 122 (21 residues), see Phobius details amino acids 134 to 156 (23 residues), see Phobius details PF01595: CNNM" amino acids 7 to 199 (193 residues), 166.9 bits, see alignment E=6.1e-53 PF00571: CBS" amino acids 287 to 333 (47 residues), 16.8 bits, see alignment 1.1e-06 PF03471: CorC_HlyC" amino acids 353 to 430 (78 residues), 80.4 bits, see alignment E=1.2e-26

Best Hits

Swiss-Prot: 43% identical to Y260_SYNY3: UPF0053 protein sll0260 (sll0260) from Synechocystis sp. (strain PCC 6803 / Kazusa)

KEGG orthology group: K03699, putative hemolysin (inferred from 83% identity to xau:Xaut_4139)

Predicted SEED Role

"Magnesium and cobalt efflux protein CorC" in subsystem Copper homeostasis: copper tolerance or Phosphate metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (442 amino acids)

>GFF917 hypothetical protein (Xanthobacter sp. DMC5)
MPLLEILIVLVLVLINAVLAAAELSIVSSRPARLKTLADRGNKGAKAAIRLAEDPGRFLS
TVQIGITLIGILAGAFSGASLGDLLGETLREAGLPTGVAHPLGYTMVVVAITYVSLVIGE
LIPKRLALQNAEPLACMVAPLMIGLSKVSAPMVWLLDASTRAVLTLLGRGGSRASSVTDE
EIRAIITEAETAGVIDPAERRMISGVMRLADRPVTAIMTPRPDVEWVDISKDAEEVRHVL
LTTPHSRLPACDGSPEETIGVIQAKRVLDAYLKGERPDPRQYVQTVPFIVENVGALEAMR
VLRGAEVPMAIVVDEYGDMAGVVTGYDLLLAITGSVEAGHQPGDAHVERNVVERHDGSYL
VAGDTPVDELRDLLDVALPTDEGFHTVAGFALSHLKELPEEGEVFTALGWRFEIVDMDGR
RIDKLLVSRPHVLHRQEVAGQG