Protein Info for PS417_04635 in Pseudomonas simiae WCS417

Annotation: cell division protein FtsW

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 407 transmembrane" amino acids 26 to 46 (21 residues), see Phobius details amino acids 65 to 85 (21 residues), see Phobius details amino acids 91 to 111 (21 residues), see Phobius details amino acids 127 to 147 (21 residues), see Phobius details amino acids 157 to 175 (19 residues), see Phobius details amino acids 181 to 199 (19 residues), see Phobius details amino acids 205 to 224 (20 residues), see Phobius details amino acids 289 to 310 (22 residues), see Phobius details amino acids 322 to 344 (23 residues), see Phobius details amino acids 358 to 377 (20 residues), see Phobius details TIGR02614: cell division protein FtsW" amino acids 27 to 382 (356 residues), 431.3 bits, see alignment E=1.5e-133 PF01098: FTSW_RODA_SPOVE" amino acids 30 to 384 (355 residues), 340.3 bits, see alignment E=6.3e-106

Best Hits

Swiss-Prot: 99% identical to FTSW_PSEFS: Probable peptidoglycan glycosyltransferase FtsW (ftsW) from Pseudomonas fluorescens (strain SBW25)

KEGG orthology group: K03588, cell division protein FtsW (inferred from 99% identity to pfs:PFLU0946)

Predicted SEED Role

"Cell division protein FtsW" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UD29 at UniProt or InterPro

Protein Sequence (407 amino acids)

>PS417_04635 cell division protein FtsW (Pseudomonas simiae WCS417)
MSIDFRNIIKPYPSPIITGRGIDLDFPMLAGCLALLGLGLVMITSASSEVAAVQSGNTLY
MMIRHLVYLVIGLGACIVTMMIPIATWQRLGWMMLIGAFGLLIMVILPGIGREVNGSMRW
IGFGAFNVQPSEIAKVFVVIYLAGYLVRRQKEVRESWMGFFKPFIVLLPMAGLLLMEPDF
GATVVMMGAAAAMLFLGGVGLFRFTLMVVLAVAAVTVLVQAQPYRMARLITFTDPWADQF
GSGYQLTQALIAFGRGEWLGVGLGNSVQKQFYLPEAHTDFVFSVLAEELGVVGSLCTVAL
FVFVCVRGMYIGLWAEKAKQYFAAYVAYGLSFLWIGQFLINIGVNVGLLPTKGLTLPFLS
YGGSSLVICCACLGLLLRIEWESRTHLGSEEMEFSESDFAEEPPHGR