Protein Info for GFF913 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Immune-responsive protein 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 474 PF03972: MmgE_PrpD_N" amino acids 16 to 251 (236 residues), 192.1 bits, see alignment E=1e-60 PF19305: MmgE_PrpD_C" amino acids 281 to 448 (168 residues), 115.1 bits, see alignment E=3.3e-37

Best Hits

KEGG orthology group: None (inferred from 52% identity to bpt:Bpet0850)

Predicted SEED Role

"Immune-responsive protein 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (474 amino acids)

>GFF913 Immune-responsive protein 1 (Hydrogenophaga sp. GW460-11-11-14-LB1)
VPTDTTDPATDNIATQLAAFAHGLKPGMLPAVVVEQAKLLMLDALGIALASSQHDFAHCA
YRGLRALGGAGDSAVMGAFAPLPLRDAVLMNGILVHGLDFDDTHPGAITHPSASAFPLAL
GLAAQRHATGPEMITAYVLAIEVAARLGAAAGGGFHDVGFHPTGLVGAFGCALAAGKLMG
LDQVGLEHAQGVVLSMASGSMEFLSDGAWTKRMHPGWAGVSGLTATALAGAGFRGPSQPY
EGRFGLYASHLAARGLLADLSLCTRGLGERWELLEVAVKLYPTCHFTHASIDAALALRAT
GLRAEEVASVQVLLPPGVHPVVCEPVAAKRRPANVYESQFSIHHLVALALLRGELGLAEL
DAANLSDPQVQALADRIEHAADPDADYPTFFSGELHVRTNDGRELRWRESAHRGAPGRPI
TAADIEAKFMGNALLALPRDQALRLRDALLSADRAEDAATLAHTLTHSNTSGSL