Protein Info for PS417_04610 in Pseudomonas simiae WCS417

Annotation: cell division protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 581 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF03717: PBP_dimer" amino acids 55 to 204 (150 residues), 68.7 bits, see alignment E=8.8e-23 PF00905: Transpeptidase" amino acids 245 to 545 (301 residues), 284.3 bits, see alignment E=1.1e-88

Best Hits

Swiss-Prot: 78% identical to FTSI_PSEAE: Peptidoglycan D,D-transpeptidase FtsI (ftsI) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: K03587, cell division protein FtsI (penicillin-binding protein 3) [EC: 2.4.1.129] (inferred from 100% identity to pfs:PFLU0941)

MetaCyc: 44% identical to peptidoglycan DD-transpeptidase FtsI (Escherichia coli K-12 substr. MG1655)
Serine-type D-Ala-D-Ala carboxypeptidase. [EC: 3.4.16.4]

Predicted SEED Role

"Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129)" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton or Flagellum in Campylobacter or Peptidoglycan Biosynthesis (EC 2.4.1.129)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.4.1.129, 3.4.16.4

Use Curated BLAST to search for 2.4.1.129 or 3.4.16.4

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UAF0 at UniProt or InterPro

Protein Sequence (581 amino acids)

>PS417_04610 cell division protein (Pseudomonas simiae WCS417)
MMKLEGALYPWRFRLMLGLLALMVGAIAWRIIDLQVVDRDFLIGQGDARSLRHIPIPAHR
GLITDRNGEPLAVSTPVTTLWANAKELQVAKDRWPALAAALGQDPKALAERLEAQANKEF
IYLVRGLTPEQGQQVLDLKVPGVYGIEEFRRFYPAGETTAHMVGFTDIDDHGREGVELAY
DEWLAGVPGKRQVIKDRRGRLIKDVQVTKNAKAGKPLALSIDLRLQYLANRELRNAIIEN
GAKAGSLVIMDVKTGEILAMVNQPTYNPNNRRNLQPAMMRNRAMIDVFEPGSTMKAISMS
AALETGRWKPSDKVEVYPGTLQLGKYTIRDVSRTEGPVLDLTGILINSSNVGMSKVAFDI
GGETIYHLAQKIGLGQPTGLDFPGERVGNLPNYRDWKKAETATLSYGYGLSVTAIQLAHA
FSVLANNGRMVPLSLIHVDEAPKATQVIPENVAKTMQGMLQQVIEAPRGVFRAQVPAYHV
AGKSGTARKTSVGTKGYAENSYRSLFAGFGPMSDPRYAIVVVIDEPSKAGYFGGLVSAPV
FSKVMSGTLRLMNITPDNLPPTQQANAGPPAAAVKANGGRG