Protein Info for GFF907 in Sphingobium sp. HT1-2

Annotation: Uncharacterized MFS-type transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 554 transmembrane" amino acids 25 to 45 (21 residues), see Phobius details amino acids 57 to 78 (22 residues), see Phobius details amino acids 87 to 108 (22 residues), see Phobius details amino acids 114 to 133 (20 residues), see Phobius details amino acids 145 to 161 (17 residues), see Phobius details amino acids 170 to 198 (29 residues), see Phobius details amino acids 229 to 251 (23 residues), see Phobius details amino acids 265 to 285 (21 residues), see Phobius details amino acids 297 to 316 (20 residues), see Phobius details amino acids 322 to 342 (21 residues), see Phobius details amino acids 354 to 376 (23 residues), see Phobius details amino acids 384 to 403 (20 residues), see Phobius details PF05977: MFS_3" amino acids 12 to 529 (518 residues), 545 bits, see alignment E=1.7e-167 PF07690: MFS_1" amino acids 26 to 347 (322 residues), 106.9 bits, see alignment E=1.1e-34 amino acids 237 to 415 (179 residues), 47.3 bits, see alignment E=1.4e-16

Best Hits

KEGG orthology group: None (inferred from 55% identity to rpd:RPD_0685)

Predicted SEED Role

"MFS permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (554 amino acids)

>GFF907 Uncharacterized MFS-type transporter (Sphingobium sp. HT1-2)
MAQGEVAQATGGSFAPLREPVFRRIWTASLLSNFGQLILGVGAAWEMTRMSASPSMVALV
QTAMMLPLMLVTLPAGAFADMFDRRRIAMSGLAFSMACAALLTFLAWTGHSSPWMLLAFC
SLIGAGVALYSPAWQASISEQVGPRLLPAAVALGTISYNVARSFGPALGGIIVLAAGAHA
AFAINAICYLPLFLAFFAWQRRHVPARLPPEQFHRAMVSGMRYALHAGAIRTVLLRAFLF
GLAGASASALAPLVAKDLLGGDASIYGLLLGASGVGAVLGALLVGPCRDRFGTQRTTAVL
ALVSGIALALVGVSRHVPLTCLALLVAGGANILTIALFNVSVQLSAPRWVTARALSLFSS
ALTGGIAIGALLWGLVAQSWSVDIALYGSGLALAILPLVGWLLPLPETSEADVEPFIIAG
EPEVGMALTRRSGPVIIEIDYDVDPDQARDFYAAMVEVQRTRMRNGGFNWSIARDIADPA
LWTERYQCPTWGDYLHMRDRFTQADKLAQQVARAFDRKAGEVRVRRRLERPFGSVRWRAD
SPDPRQDTIGYLGP