Protein Info for GFF906 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 552 signal peptide" amino acids 1 to 42 (42 residues), see Phobius details transmembrane" amino acids 260 to 287 (28 residues), see Phobius details amino acids 294 to 309 (16 residues), see Phobius details amino acids 317 to 339 (23 residues), see Phobius details amino acids 351 to 368 (18 residues), see Phobius details amino acids 401 to 419 (19 residues), see Phobius details amino acids 450 to 469 (20 residues), see Phobius details amino acids 482 to 509 (28 residues), see Phobius details amino acids 517 to 535 (19 residues), see Phobius details TIGR03409: urea ABC transporter, permease protein UrtB" amino acids 258 to 548 (291 residues), 441.7 bits, see alignment E=7.7e-137 PF02653: BPD_transp_2" amino acids 262 to 534 (273 residues), 163.8 bits, see alignment E=2.4e-52

Best Hits

KEGG orthology group: K01997, branched-chain amino acid transport system permease protein (inferred from 82% identity to xau:Xaut_4150)

Predicted SEED Role

"Urea ABC transporter, permease protein UrtB" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (552 amino acids)

>GFF906 hypothetical protein (Xanthobacter sp. DMC5)
MMRLPLSVPQANVSPSTLRTLFLSFLAVLMAGLVASVPARAQSQPDISGIIAKFGNDSYS
DTTDAVAALATSGSPQAAAVVEALAAGNLLYDPATKAVFIRTPSGMVDPATGAIVGSAPA
NLTPVRANNRVRRALDAAAGALTLLNADPAKRLDAAAAVFKSRDAAALPTVEAAIAKETV
PAVKAALAQARAAILIGKADAPEPDRRAAIQLIAARGDQESISLLRSLPANSPPALKAAA
EAGITKAEESLKFWAVVQNVWYGLSLGSVLLLAAIGLAITFGVMGVINMAHGEMVMLGAY
TTFVVQELIRQKAPYLFDWSLTIALPLAFLFTALVGILIERTVIRFLYGRPLETLLATWG
VSLILQQAVRSVFGPTNQEVGAPSWMSGAFQIGQLSITYNRLWIICFALIVFFTLLLVLR
RTPLGLYVRAVTQNRRMAAAMGIRTGRIDALTFGLGSGIAGIAGVALSQIDNVSPNLGQG
YIIDSFMVVVFGGVGNLWGTLVGAFTLGVANKLLEPFAGAVLGKILLLVFIILFIQKRPR
GLFALKGRAVES