Protein Info for GFF904 in Xanthobacter sp. DMC5

Annotation: Ribose import ATP-binding protein RbsA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 285 TIGR03411: urea ABC transporter, ATP-binding protein UrtD" amino acids 44 to 285 (242 residues), 368.3 bits, see alignment E=9.6e-115 PF00005: ABC_tran" amino acids 60 to 214 (155 residues), 99.1 bits, see alignment E=4.9e-32 PF12399: BCA_ABC_TP_C" amino acids 263 to 285 (23 residues), 29.6 bits, see alignment (E = 6.3e-11)

Best Hits

KEGG orthology group: K01995, branched-chain amino acid transport system ATP-binding protein (inferred from 87% identity to xau:Xaut_4152)

Predicted SEED Role

"Urea ABC transporter, ATPase protein UrtD" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (285 amino acids)

>GFF904 Ribose import ATP-binding protein RbsA (Xanthobacter sp. DMC5)
MSMLSPSADPYAVKSHGALSLEAELGFLKAEQPGPDPMALTPALLYLDNITVSFDGFRAL
NALSLVIGEAEMRAIIGPNGAGKTTMMDVITGKTRPNQGVALFAGTNDLTSMDEAAIAQL
GIGRKFQTPTVFDMHSVEDNILLAVKADRRPFANIEWNPSRHERERVEELLERVRLKDSR
HRRAGDLSHGQKQWLEIGMLLAQEPRLLLVDEPAAGMTDQETADTAVLLREIAKTRSVVV
VEHDMQFVRDLDVKVTVLHEGSVLAEGPLDQVSADDRVIEVYLGR